Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABU975_RS06260 Genome accession   NZ_CP159114
Coordinates   1340272..1341945 (-) Length   557 a.a.
NCBI ID   WP_002387037.1    Uniprot ID   -
Organism   Enterococcus faecalis strain 10033598-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335272..1346945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU975_RS06230 (ABU975_06230) ftsL 1336287..1336694 (-) 408 WP_002358883.1 cell division protein FtsL -
  ABU975_RS06235 (ABU975_06235) rsmH 1336711..1337667 (-) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ABU975_RS06240 (ABU975_06240) mraZ 1337682..1338167 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  ABU975_RS06245 (ABU975_06245) - 1338401..1338793 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  ABU975_RS06250 (ABU975_06250) - 1339038..1340003 (+) 966 WP_002387038.1 magnesium transporter CorA family protein -
  ABU975_RS06255 (ABU975_06255) - 1340071..1340181 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  ABU975_RS06260 (ABU975_06260) recN 1340272..1341945 (-) 1674 WP_002387037.1 DNA repair protein RecN Machinery gene
  ABU975_RS06265 (ABU975_06265) - 1341963..1342412 (-) 450 WP_002358881.1 ArgR family transcriptional regulator -
  ABU975_RS06270 (ABU975_06270) - 1342551..1343366 (-) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  ABU975_RS06275 (ABU975_06275) - 1343380..1344261 (-) 882 WP_002379200.1 polyprenyl synthetase family protein -
  ABU975_RS06280 (ABU975_06280) - 1344261..1344491 (-) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  ABU975_RS06285 (ABU975_06285) xseA 1344493..1345839 (-) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  ABU975_RS06290 (ABU975_06290) - 1345849..1346694 (-) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62631.04 Da        Isoelectric Point: 4.5772

>NTDB_id=1012276 ABU975_RS06260 WP_002387037.1 1340272..1341945(-) (recN) [Enterococcus faecalis strain 10033598-3]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=1012276 ABU975_RS06260 WP_002387037.1 1340272..1341945(-) (recN) [Enterococcus faecalis strain 10033598-3]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGCATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496

Multiple sequence alignment