Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOKI128_RS03665 Genome accession   NZ_CP006822
Coordinates   759932..761452 (-) Length   506 a.a.
NCBI ID   WP_025288212.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 754932..766452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS03655 (HPOKI128_03775) - 756528..757811 (-) 1284 WP_025288210.1 restriction endonuclease subunit S -
  HPOKI128_RS03660 (HPOKI128_03780) - 757847..759907 (-) 2061 WP_025288211.1 heavy metal translocating P-type ATPase -
  HPOKI128_RS03665 (HPOKI128_03785) comM 759932..761452 (-) 1521 WP_025288212.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOKI128_RS03670 (HPOKI128_03790) def 761458..761982 (-) 525 WP_025288213.1 peptide deformylase -
  HPOKI128_RS03675 (HPOKI128_03795) clpP 761987..762574 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOKI128_RS03680 (HPOKI128_03800) tig 762597..763952 (-) 1356 WP_025288214.1 trigger factor -
  HPOKI128_RS03685 (HPOKI128_03805) - 764065..764901 (-) 837 WP_025288215.1 outer membrane protein -
  HPOKI128_RS03690 (HPOKI128_03810) hpaA 764926..765708 (-) 783 WP_025288216.1 flagellar sheath lipoprotein HpaA -
  HPOKI128_RS03695 (HPOKI128_03815) moaC 765827..766303 (-) 477 WP_001131559.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57410.47 Da        Isoelectric Point: 8.2329

>NTDB_id=101227 HPOKI128_RS03665 WP_025288212.1 759932..761452(-) (comM) [Helicobacter pylori oki128]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSDLQNNDFTFLPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIVPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASTGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
RNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=101227 HPOKI128_RS03665 WP_025288212.1 759932..761452(-) (comM) [Helicobacter pylori oki128]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTTCAATCGGATTTACAAA
ATAACGATTTCACTTTCCTGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGTGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCACTGGGTTTCATAACTTGATTTTAGAAGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CACCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
AGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTGTTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.443

100

0.964

Multiple sequence alignment