Detailed information NTG1012162

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABUE27_RS11735
• Genome accession: NZ_CP158974
• Coordinates: 2600271..2601278 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain CNRVC240027
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2595271..2606278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUE27_RS11725 (ABUE27_11720)	cysM	2596435..2597322 (+)	888	WP_001279365.1	cysteine synthase CysM	-
ABUE27_RS11730 (ABUE27_11725)	mutS	2597590..2600178 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
ABUE27_RS11735 (ABUE27_11730)	rpoS	2600271..2601278 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
ABUE27_RS11740 (ABUE27_11735)	nlpD	2601352..2602287 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
ABUE27_RS11745 (ABUE27_11740)	-	2602287..2602913 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABUE27_RS11750 (ABUE27_11745)	surE	2602906..2603658 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
ABUE27_RS11755 (ABUE27_11750)	truD	2603660..2604745 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
ABUE27_RS11760 (ABUE27_11755)	ispF	2604775..2605251 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABUE27_RS11765 (ABUE27_11760)	ispD	2605248..2605946 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABUE27_RS11770 (ABUE27_11765)	ftsB	2605943..2606227 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=1012162 ABUE27_RS11735 WP_000116737.1 2600271..2601278(-) (rpoS) [Vibrio cholerae strain CNRVC240027]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1012162 ABUE27_RS11735 WP_000116737.1 2600271..2601278(-) (rpoS) [Vibrio cholerae strain CNRVC240027]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1