Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPOKI128_RS00580 Genome accession   NZ_CP006822
Coordinates   111187..111654 (-) Length   155 a.a.
NCBI ID   WP_025222399.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 106187..116654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS00560 (HPOKI128_00590) - 106436..107197 (+) 762 WP_025287772.1 outer membrane beta-barrel protein -
  HPOKI128_RS00565 (HPOKI128_00595) - 107169..107951 (-) 783 WP_025287773.1 glycosyltransferase family 2 protein -
  HPOKI128_RS00570 (HPOKI128_00600) tlpB 107982..109680 (-) 1699 Protein_109 methyl-accepting chemotaxis protein TlpB -
  HPOKI128_RS00575 (HPOKI128_00605) - 109880..111007 (-) 1128 Protein_110 bifunctional metallophosphatase/5'-nucleotidase -
  HPOKI128_RS00580 (HPOKI128_00610) luxS 111187..111654 (-) 468 WP_025222399.1 S-ribosylhomocysteine lyase Regulator
  HPOKI128_RS00585 (HPOKI128_00615) - 111689..112831 (-) 1143 WP_025222400.1 cystathionine gamma-synthase -
  HPOKI128_RS00590 (HPOKI128_00620) - 112852..113769 (-) 918 WP_025222401.1 O-acetylserine-dependent cystathionine beta-synthase -
  HPOKI128_RS00595 (HPOKI128_00625) - 113877..114455 (+) 579 WP_025287774.1 hypothetical protein -
  HPOKI128_RS00600 (HPOKI128_00630) dnaK 114594..116456 (-) 1863 WP_025287775.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17678.15 Da        Isoelectric Point: 6.6039

>NTDB_id=101213 HPOKI128_RS00580 WP_025222399.1 111187..111654(-) (luxS) [Helicobacter pylori oki128]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDDYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRNEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=101213 HPOKI128_RS00580 WP_025222399.1 111187..111654(-) (luxS) [Helicobacter pylori oki128]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAGACGGGATTTTATCTCACGGTGTTAAACCATGACGATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCACGCGCTTTTTTAGACAAACGCAATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment