Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H1W81_RS01055 Genome accession   NZ_LR824002
Coordinates   208056..208829 (-) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus isolate STH_CIRM_67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203056..213829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W81_RS01040 (STHERMO_0221) purC 205598..206305 (-) 708 WP_011225260.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  H1W81_RS01045 (STHERMO_0222) - 206591..206836 (-) 246 WP_002949008.1 phosphopantetheine-binding protein -
  H1W81_RS01050 (STHERMO_0223) plsX 206836..207840 (-) 1005 WP_011225258.1 phosphate acyltransferase PlsX -
  H1W81_RS01055 (STHERMO_0224) recO 208056..208829 (-) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  H1W81_RS01060 (STHERMO_0225) - 208816..209991 (-) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  H1W81_RS01065 - 210203..211058 (+) 856 Protein_188 transposase -
  H1W81_RS01070 (STHERMO_0228) - 211100..212065 (-) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  H1W81_RS01075 (STHERMO_0229) pcsB 212279..213589 (-) 1311 WP_179971690.1 peptidoglycan hydrolase PcsB -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=1012114 H1W81_RS01055 WP_002946256.1 208056..208829(-) (recO) [Streptococcus thermophilus isolate STH_CIRM_67]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1012114 H1W81_RS01055 WP_002946256.1 208056..208829(-) (recO) [Streptococcus thermophilus isolate STH_CIRM_67]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607