Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPOKI112_RS06055 Genome accession   NZ_CP006821
Coordinates   1282703..1283752 (+) Length   349 a.a.
NCBI ID   WP_025309962.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277703..1288752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS06040 (HPOKI112_06280) - 1278278..1280098 (+) 1821 WP_025276284.1 hypothetical protein -
  HPOKI112_RS06045 (HPOKI112_06285) asd 1280286..1281326 (-) 1041 WP_025277092.1 aspartate-semialdehyde dehydrogenase -
  HPOKI112_RS06050 (HPOKI112_06290) hisS 1281313..1282641 (-) 1329 WP_015428190.1 histidine--tRNA ligase -
  HPOKI112_RS06055 (HPOKI112_06295) waaF 1282703..1283752 (+) 1050 WP_025309962.1 lipopolysaccharide heptosyltransferase II Regulator
  HPOKI112_RS06060 (HPOKI112_06300) - 1283930..1284256 (-) 327 WP_000744163.1 hypothetical protein -
  HPOKI112_RS06065 (HPOKI112_06310) fusA 1284851..1286929 (-) 2079 WP_000101825.1 elongation factor G -
  HPOKI112_RS06070 (HPOKI112_06315) rpsG 1286941..1287408 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPOKI112_RS06075 (HPOKI112_06320) rpsL 1287424..1287831 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39471.14 Da        Isoelectric Point: 9.3633

>NTDB_id=101208 HPOKI112_RS06055 WP_025309962.1 1282703..1283752(+) (waaF) [Helicobacter pylori oki112]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSIAPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=101208 HPOKI112_RS06055 WP_025309962.1 1282703..1283752(+) (waaF) [Helicobacter pylori oki112]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAGGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCGCGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.861

99.14

0.375

Multiple sequence alignment