Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPOKI112_RS05130 Genome accession   NZ_CP006821
Coordinates   1087701..1088966 (-) Length   421 a.a.
NCBI ID   WP_025309900.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082701..1093966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS05090 (HPOKI112_05310) - 1082822..1084549 (-) 1728 WP_025276159.1 type IV secretory system conjugative DNA transfer family protein -
  HPOKI112_RS05095 (HPOKI112_05315) - 1084550..1085107 (-) 558 WP_025277016.1 hypothetical protein -
  HPOKI112_RS05100 (HPOKI112_05320) - 1085108..1085398 (-) 291 WP_000159826.1 hypothetical protein -
  HPOKI112_RS05105 (HPOKI112_05325) - 1085395..1085850 (-) 456 WP_025276161.1 hypothetical protein -
  HPOKI112_RS05110 (HPOKI112_05330) - 1085847..1086786 (-) 940 Protein_1003 CpaF/VirB11 family protein -
  HPOKI112_RS05115 (HPOKI112_05335) - 1086786..1087085 (-) 300 WP_025309899.1 hypothetical protein -
  HPOKI112_RS05120 (HPOKI112_05340) - 1087082..1087345 (-) 264 WP_025276164.1 hypothetical protein -
  HPOKI112_RS05125 (HPOKI112_05345) - 1087338..1087631 (-) 294 WP_025276165.1 hypothetical protein -
  HPOKI112_RS05130 (HPOKI112_05350) comB10 1087701..1088966 (-) 1266 WP_025309900.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI112_RS05135 (HPOKI112_05355) - 1088966..1090483 (-) 1518 WP_025277017.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HPOKI112_RS08670 - 1090483..1091229 (-) 747 WP_038416864.1 type IV secretion system protein -
  HPOKI112_RS08675 - 1091287..1091652 (-) 366 WP_240444701.1 hypothetical protein -
  HPOKI112_RS05150 (HPOKI112_05365) - 1091769..1093802 (-) 2034 WP_025277018.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 47603.89 Da        Isoelectric Point: 10.1229

>NTDB_id=101203 HPOKI112_RS05130 WP_025309900.1 1087701..1088966(-) (comB10) [Helicobacter pylori oki112]
MGFFRVIRNAPIVSVFIVLMLIFCAWFFLYDDSSPKAVRNYVKSKFPISDYLYKKADKKKIPPQNNVIKQEIKEEEIKKS
CKGQMTDNKGNLIDDDCNIIATQKQVNNLPNLPKDILKTKPTVASNPFNYNTANEEEKTRLVILASRISSQKETQPPTSI
KNSVSNTKSKEKQELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGR
AALIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=101203 HPOKI112_RS05130 WP_025309900.1 1087701..1088966(-) (comB10) [Helicobacter pylori oki112]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTGTCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCACCTAAAGCAGTGAGAAATTATGTTAAAAGCAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGCGGATAAAAAGAAGATCCCACCACAGAACAATGTCATTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATGACAGATAATAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAACTTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACCGTTGCCTCCAATCCTTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGTAGCCAAAAAGAAACGCAGCCTCCAACCTCTATA
AAAAATAGTGTTTCTAATACAAAATCCAAAGAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTT
TAAAAGAAAAAATATAGCGAGCAGTGAAAACAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGTAGTGAAATAGGGGGGAGTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGCTTTAATCCCCAAAGGGAGTAGAGCCATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATCATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGGGGTGGTTTTAATCAAAACTATTTTGGAGA
CTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTCTTTAATGAAGAAAAGGAACAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(202-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

55.137

69.359

0.382

Multiple sequence alignment