Detailed information NTG1011982

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LJDFIFNA_RS06975
• Genome accession: NZ_LR822060
• Coordinates: 1348411..1349493 (-)
• Length: 360 a.a.
• NCBI ID: WP_001557172.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate P3.1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1343411..1354493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJDFIFNA_RS06955 (H0509_RS06955)	-	1344020..1344124 (-)	105	WP_001790092.1	hypothetical protein	-
LJDFIFNA_RS06960 (BKMNNEJI_01334)	secA	1344166..1346697 (-)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
LJDFIFNA_RS06965 (BKMNNEJI_01335)	hpf	1347111..1347683 (-)	573	WP_000617735.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
LJDFIFNA_RS06970 (BKMNNEJI_01336)	-	1347744..1348418 (-)	675	WP_001057965.1	ComF family protein	-
LJDFIFNA_RS06975 (BKMNNEJI_01337)	comFA	1348411..1349493 (-)	1083	WP_001557172.1	DEAD/DEAH box helicase	Machinery gene
LJDFIFNA_RS06980 (BKMNNEJI_01338)	fakB1	1349857..1350723 (-)	867	WP_000686344.1	fatty acid kinase binding subunit FakB1	-
LJDFIFNA_RS06985 (BKMNNEJI_01339)	-	1350867..1351508 (+)	642	WP_000192949.1	YigZ family protein	-
LJDFIFNA_RS06990 (BKMNNEJI_01340)	-	1351673..1352728 (-)	1056	WP_000258150.1	glycosyltransferase family 4 protein	-
LJDFIFNA_RS06995 (BKMNNEJI_01341)	gdpS	1353046..1354116 (+)	1071	WP_000460983.1	GGDEF domain-containing protein GdpS	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42017.47 Da
• Isoelectric Point: 9.6864

>NTDB_id=1011982 LJDFIFNA_RS06975 WP_001557172.1 1348411..1349493(-) (comFA) [Staphylococcus aureus isolate P3.1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=1011982 LJDFIFNA_RS06975 WP_001557172.1 1348411..1349493(-) (comFA) [Staphylococcus aureus isolate P3.1]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Type III restriction enzyme, res subunit (ResIII) (25-173)

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367