Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOKI112_RS02960 Genome accession   NZ_CP006821
Coordinates   601600..603120 (+) Length   506 a.a.
NCBI ID   WP_025309729.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596600..608120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS02930 (HPOKI112_03040) moaC 596748..597224 (+) 477 WP_025275843.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPOKI112_RS02935 (HPOKI112_03045) hpaA 597343..598125 (+) 783 WP_025276811.1 flagellar sheath lipoprotein HpaA -
  HPOKI112_RS02940 (HPOKI112_03050) - 598154..598990 (+) 837 WP_025275845.1 outer membrane protein -
  HPOKI112_RS02945 (HPOKI112_03055) tig 599102..600457 (+) 1356 WP_025275846.1 trigger factor -
  HPOKI112_RS02950 (HPOKI112_03060) clpP 600478..601065 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOKI112_RS02955 (HPOKI112_03065) def 601070..601594 (+) 525 WP_015427911.1 peptide deformylase -
  HPOKI112_RS02960 (HPOKI112_03070) comM 601600..603120 (+) 1521 WP_025309729.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOKI112_RS02965 (HPOKI112_03075) - 603145..605205 (+) 2061 WP_025309730.1 heavy metal translocating P-type ATPase -
  HPOKI112_RS02970 (HPOKI112_03080) - 605241..606557 (+) 1317 WP_025309731.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57206.23 Da        Isoelectric Point: 8.6896

>NTDB_id=101198 HPOKI112_RS02960 WP_025309729.1 601600..603120(+) (comM) [Helicobacter pylori oki112]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
RNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACEDIEKTHVLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=101198 HPOKI112_RS02960 WP_025309729.1 601600..603120(+) (comM) [Helicobacter pylori oki112]
ATGATTAACACGATATTTTGCACGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCCGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAGTCAGCCTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCATACGAAAAAACTACCCTTTAAAACGATAGAATTAAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCCTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
AGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAACAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAAACTCATGTGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.204

100

0.366