Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABUH86_RS11740 Genome accession   NZ_CP158669
Coordinates   2437949..2438749 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain XY40-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2432949..2443749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS11710 (ABUH86_11710) - 2433490..2434122 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  ABUH86_RS11715 (ABUH86_11715) - 2434413..2434550 (+) 138 WP_014470646.1 hypothetical protein -
  ABUH86_RS11720 (ABUH86_11720) - 2434644..2435762 (+) 1119 WP_003153184.1 NADH-dependent flavin oxidoreductase -
  ABUH86_RS11725 (ABUH86_11725) - 2435889..2436101 (+) 213 WP_003153183.1 spore germination protein -
  ABUH86_RS11730 (ABUH86_11730) - 2436228..2436440 (+) 213 WP_014305392.1 spore germination protein -
  ABUH86_RS11735 (ABUH86_11735) alr 2436616..2437797 (+) 1182 WP_025852858.1 alanine racemase -
  ABUH86_RS11740 (ABUH86_11740) spo0A 2437949..2438749 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ABUH86_RS11745 (ABUH86_11745) spoIVB 2439030..2440310 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ABUH86_RS11750 (ABUH86_11750) recN 2440474..2442204 (-) 1731 WP_353406146.1 DNA repair protein RecN Machinery gene
  ABUH86_RS11755 (ABUH86_11755) argR 2442236..2442685 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  ABUH86_RS11760 (ABUH86_11760) - 2442782..2443627 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=1011922 ABUH86_RS11740 WP_003153177.1 2437949..2438749(-) (spo0A) [Bacillus velezensis strain XY40-1]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1011922 ABUH86_RS11740 WP_003153177.1 2437949..2438749(-) (spo0A) [Bacillus velezensis strain XY40-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGGTATACCGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment