Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABUH86_RS10675 Genome accession   NZ_CP158669
Coordinates   2192194..2192802 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain XY40-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187194..2197802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS10635 (ABUH86_10635) - 2188214..2188720 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  ABUH86_RS10640 (ABUH86_10640) - 2188859..2189272 (+) 414 WP_017418017.1 hypothetical protein -
  ABUH86_RS10645 (ABUH86_10645) - 2189302..2189769 (-) 468 WP_150941282.1 YppG family protein -
  ABUH86_RS10650 (ABUH86_10650) - 2189956..2190138 (+) 183 WP_003153532.1 YppF family protein -
  ABUH86_RS10655 (ABUH86_10655) - 2190177..2190545 (-) 369 WP_060562799.1 YppE family protein -
  ABUH86_RS10660 (ABUH86_10660) - 2190591..2190836 (-) 246 WP_039063257.1 DUF5446 family protein -
  ABUH86_RS10665 (ABUH86_10665) sspM 2191042..2191146 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ABUH86_RS10670 (ABUH86_10670) - 2191190..2192152 (-) 963 WP_353406018.1 DUF2515 domain-containing protein -
  ABUH86_RS10675 (ABUH86_10675) recU 2192194..2192802 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  ABUH86_RS10680 (ABUH86_10680) - 2192841..2195624 (+) 2784 WP_353406020.1 PBP1A family penicillin-binding protein -
  ABUH86_RS10685 (ABUH86_10685) - 2195702..2196193 (-) 492 WP_052827590.1 YpoC family protein -
  ABUH86_RS10690 (ABUH86_10690) nth 2196190..2196849 (-) 660 WP_060562797.1 endonuclease III -
  ABUH86_RS10695 (ABUH86_10695) dnaD 2196868..2197566 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=1011921 ABUH86_RS10675 WP_012117837.1 2192194..2192802(+) (recU) [Bacillus velezensis strain XY40-1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1011921 ABUH86_RS10675 WP_012117837.1 2192194..2192802(+) (recU) [Bacillus velezensis strain XY40-1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTCAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment