Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABUH86_RS05275 Genome accession   NZ_CP158669
Coordinates   1036759..1037337 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031759..1042337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS05255 (ABUH86_05255) - 1032259..1033551 (-) 1293 WP_052827237.1 globin-coupled sensor protein -
  ABUH86_RS05260 (ABUH86_05260) - 1033674..1035197 (-) 1524 WP_136396250.1 FAD-dependent oxidoreductase -
  ABUH86_RS05265 (ABUH86_05265) - 1035322..1036179 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  ABUH86_RS05270 (ABUH86_05270) - 1036210..1036443 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  ABUH86_RS05275 (ABUH86_05275) comK 1036759..1037337 (+) 579 WP_012117234.1 competence protein ComK Regulator
  ABUH86_RS05280 (ABUH86_05280) - 1037483..1037851 (+) 369 WP_099566540.1 iron chaperone -
  ABUH86_RS05285 (ABUH86_05285) - 1037878..1038249 (+) 372 WP_015239528.1 iron chaperone -
  ABUH86_RS05290 (ABUH86_05290) - 1038369..1038878 (+) 510 WP_012117237.1 mep operon protein MepB -
  ABUH86_RS05295 (ABUH86_05295) - 1039107..1039817 (-) 711 WP_015239530.1 YrpD family protein -
  ABUH86_RS05300 (ABUH86_05300) - 1040012..1040281 (+) 270 WP_353407522.1 excalibur calcium-binding domain-containing protein -
  ABUH86_RS05305 (ABUH86_05305) - 1040314..1040631 (-) 318 WP_003155166.1 YbjQ family protein -
  ABUH86_RS05310 (ABUH86_05310) - 1040673..1042142 (-) 1470 WP_015239531.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=1011902 ABUH86_RS05275 WP_012117234.1 1036759..1037337(+) (comK) [Bacillus velezensis strain XY40-1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1011902 ABUH86_RS05275 WP_012117234.1 1036759..1037337(+) (comK) [Bacillus velezensis strain XY40-1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAAGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment