Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABUH86_RS04220 Genome accession   NZ_CP158669
Coordinates   843917..844708 (+) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 838917..849708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS04195 (ABUH86_04195) - 840912..841796 (+) 885 WP_076425444.1 PhzF family phenazine biosynthesis isomerase -
  ABUH86_RS04200 (ABUH86_04200) - 841873..842457 (+) 585 WP_007408549.1 nitroreductase -
  ABUH86_RS04205 (ABUH86_04205) - 842496..842687 (-) 192 WP_003155508.1 YfhD family protein -
  ABUH86_RS04210 (ABUH86_04210) - 842758..842868 (-) 111 WP_003155504.1 YfhE family protein -
  ABUH86_RS04215 (ABUH86_04215) - 842926..843825 (-) 900 WP_136396219.1 TIGR01777 family oxidoreductase -
  ABUH86_RS04220 (ABUH86_04220) recX 843917..844708 (+) 792 WP_012117114.1 recombination regulator RecX Regulator
  ABUH86_RS04225 (ABUH86_04225) - 844715..845029 (+) 315 WP_007408553.1 YfhH family protein -
  ABUH86_RS04230 (ABUH86_04230) - 845173..846366 (+) 1194 WP_025284446.1 MFS transporter -
  ABUH86_RS04235 (ABUH86_04235) - 846406..846795 (-) 390 WP_043020687.1 DUF2606 family protein -
  ABUH86_RS04240 (ABUH86_04240) - 846758..847669 (-) 912 WP_015239429.1 serine protease -
  ABUH86_RS04245 (ABUH86_04245) - 847817..847969 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  ABUH86_RS04250 (ABUH86_04250) - 848093..848362 (+) 270 WP_003155492.1 YfhJ family protein -
  ABUH86_RS04255 (ABUH86_04255) - 848495..849022 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  ABUH86_RS04260 (ABUH86_04260) - 849108..849443 (+) 336 WP_043020688.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=1011897 ABUH86_RS04220 WP_012117114.1 843917..844708(+) (recX) [Bacillus velezensis strain XY40-1]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1011897 ABUH86_RS04220 WP_012117114.1 843917..844708(+) (recX) [Bacillus velezensis strain XY40-1]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAGGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment