Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ABUH86_RS01830 Genome accession   NZ_CP158669
Coordinates   345996..346394 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 340996..351394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS01805 (ABUH86_01805) - 341167..342369 (+) 1203 WP_353407144.1 GTP-binding protein -
  ABUH86_RS01810 (ABUH86_01810) - 342434..343570 (+) 1137 WP_220006961.1 zinc-dependent alcohol dehydrogenase -
  ABUH86_RS01815 (ABUH86_01815) - 343585..344019 (+) 435 WP_190664048.1 RDD family protein -
  ABUH86_RS01820 (ABUH86_01820) - 344092..344415 (+) 324 WP_007409357.1 YckD family protein -
  ABUH86_RS01825 (ABUH86_01825) - 344519..345955 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  ABUH86_RS01830 (ABUH86_01830) nin/comJ 345996..346394 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ABUH86_RS01835 (ABUH86_01835) nucA/comI 346415..346852 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABUH86_RS01840 (ABUH86_01840) hxlB 347211..347768 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  ABUH86_RS01845 (ABUH86_01845) hxlA 347765..348400 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ABUH86_RS01850 (ABUH86_01850) - 348632..348994 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=1011890 ABUH86_RS01830 WP_007609299.1 345996..346394(-) (nin/comJ) [Bacillus velezensis strain XY40-1]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1011890 ABUH86_RS01830 WP_007609299.1 345996..346394(-) (nin/comJ) [Bacillus velezensis strain XY40-1]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment