Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPOKI112_RS00770 Genome accession   NZ_CP006821
Coordinates   160370..160828 (-) Length   152 a.a.
NCBI ID   WP_025275532.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 155370..165828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS00755 (HPOKI112_00795) - 155789..156547 (-) 759 WP_038418606.1 glycosyltransferase family 2 protein -
  HPOKI112_RS00760 (HPOKI112_00800) tlpB 156578..158275 (-) 1698 WP_025309575.1 methyl-accepting chemotaxis protein TlpB -
  HPOKI112_RS00765 (HPOKI112_00810) - 158482..160227 (-) 1746 WP_025309576.1 bifunctional metallophosphatase/5'-nucleotidase -
  HPOKI112_RS00770 (HPOKI112_00815) luxS 160370..160828 (-) 459 WP_025275532.1 S-ribosylhomocysteine lyase Regulator
  HPOKI112_RS00775 (HPOKI112_00820) - 160866..162008 (-) 1143 WP_025275533.1 cystathionine gamma-synthase -
  HPOKI112_RS00780 (HPOKI112_00825) - 162029..162946 (-) 918 WP_025309577.1 O-acetylserine-dependent cystathionine beta-synthase -
  HPOKI112_RS00785 (HPOKI112_00830) - 163060..163639 (+) 580 Protein_145 hypothetical protein -
  HPOKI112_RS00790 (HPOKI112_00835) dnaK 163873..165735 (-) 1863 WP_025309578.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17293.63 Da        Isoelectric Point: 6.4914

>NTDB_id=101183 HPOKI112_RS00770 WP_025275532.1 160370..160828(-) (luxS) [Helicobacter pylori oki112]
MKMNVESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLAHAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=101183 HPOKI112_RS00770 WP_025275532.1 160370..160828(-) (luxS) [Helicobacter pylori oki112]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACTAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGTGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAACCCAACCAAGATCACATGGACATGCCTAGCT
TACATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGCTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCAC
AAAATTTAGCACACGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.429

92.105

0.382