Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H1W86_RS05575 Genome accession   NZ_LR822042
Coordinates   1060309..1062519 (-) Length   736 a.a.
NCBI ID   WP_014621707.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1358     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055309..1067519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W86_RS05550 (STHERMO_1205) - 1056249..1056494 (-) 246 WP_024704252.1 hypothetical protein -
  H1W86_RS05555 (STHERMO_1208) nth 1057146..1057790 (-) 645 WP_011681255.1 endonuclease III -
  H1W86_RS05560 (STHERMO_1209) - 1057790..1058488 (-) 699 WP_002947201.1 DnaD domain-containing protein -
  H1W86_RS05565 (STHERMO_1210) metA 1058560..1059504 (-) 945 WP_100262522.1 homoserine O-acetyltransferase MetA -
  H1W86_RS05570 (STHERMO_1211) - 1059676..1060194 (-) 519 WP_002947203.1 adenine phosphoribosyltransferase -
  H1W86_RS05575 (STHERMO_1212) recJ 1060309..1062519 (-) 2211 WP_014621707.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H1W86_RS05580 (STHERMO_1213) - 1062532..1063299 (-) 768 WP_011681258.1 SDR family NAD(P)-dependent oxidoreductase -
  H1W86_RS05585 (STHERMO_1214) rnz 1063299..1064228 (-) 930 WP_002947210.1 ribonuclease Z -
  H1W86_RS05590 (STHERMO_1215) - 1064260..1064901 (-) 642 WP_023909717.1 cystathionine beta-lyase -
  H1W86_RS05595 (STHERMO_1216) hflX 1064894..1066132 (-) 1239 WP_023909719.1 GTPase HflX -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82642.04 Da        Isoelectric Point: 4.4105

>NTDB_id=1011771 H1W86_RS05575 WP_014621707.1 1060309..1062519(-) (recJ) [Streptococcus thermophilus isolate STH_CIRM_1358]
MITSTYDWKINTKEPDAGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKIAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSLDTIRSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLADVRVD
NVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELGFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYKQDQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=1011771 H1W86_RS05575 WP_014621707.1 1060309..1062519(-) (recJ) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGTAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGACTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGCAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCGATTGTCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTCATCATTACAGTGGATAATGGGGTAGCTGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGCCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCCTTTAAGTATTTGGCAGGTTGTGGAGTAGCTTTCAAAATAGCAACGGCCCTCCTCG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGTATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAAATAGCCCCTCAACTCAATGCCTTAGGACGTTTAGACGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAGCGCAAGCCATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTGGATAAACCAGTTCAGGTTTT
GGCTAAGGAAGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGCCGCATCATGGAGCAAATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGATCAGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCAGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAAC
TACAACTCGGTGAGCTTAGCTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACGCTGTCCGTTAATGTATGGAATGGCCAGACAACACTACAGCTCATGTTGGCAGATGTGCGCGTGGAC
AATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGGAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGGCTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAAGCAGGATCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.027

100

0.674
  recJ Bacillus subtilis subsp. subtilis str. 168

37.292

100

0.397