Detailed information NTG1011732

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LYX99_RS19365
• Genome accession: NZ_CP158565
• Coordinates: 510424..511578 (-)
• Length: 384 a.a.
• NCBI ID: WP_021163045.1
• Uniprot ID: U2H1M2
• Organism: Burkholderia cepacia strain JK11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 505424..516578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYX99_RS19345 (LYX99_019350)	-	505975..506358 (+)	384	WP_027789089.1	nuclear transport factor 2 family protein	-
LYX99_RS19350 (LYX99_019355)	leuA	506501..508147 (-)	1647	WP_233345267.1	2-isopropylmalate synthase	-
LYX99_RS19355 (LYX99_019360)	ybiB	508528..509502 (-)	975	WP_059688680.1	DNA-binding protein YbiB	-
LYX99_RS19360 (LYX99_019365)	maiA	509696..510340 (+)	645	WP_059688681.1	maleylacetoacetate isomerase	-
LYX99_RS19365 (LYX99_019370)	pilA	510424..511578 (-)	1155	WP_021163045.1	signal recognition particle-docking protein FtsY	Machinery gene
LYX99_RS19370 (LYX99_019375)	rsmD	511795..512409 (+)	615	WP_027789093.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LYX99_RS19375 (LYX99_019380)	coaD	512521..513018 (+)	498	WP_021163047.1	pantetheine-phosphate adenylyltransferase	-
LYX99_RS19380 (LYX99_019385)	-	513078..513344 (+)	267	WP_233345238.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LYX99_RS19385 (LYX99_019390)	hisC	513429..514496 (-)	1068	WP_059688683.1	histidinol-phosphate transaminase	-
LYX99_RS19390 (LYX99_019395)	pth	514611..515210 (-)	600	WP_021163050.1	aminoacyl-tRNA hydrolase	-
LYX99_RS19395 (LYX99_019400)	-	515331..515936 (-)	606	WP_021163051.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40898.82 Da
• Isoelectric Point: 4.8018

>NTDB_id=1011732 LYX99_RS19365 WP_021163045.1 510424..511578(-) (pilA) [Burkholderia cepacia strain JK11]
MFSFFKRFKKTQEPDPAESQSADAQQTDEPSDAPAVEAPPAAEVPQAPAQPAAPAVVMTVTPTNDGRDEVVETVEIVPPP
LQDATAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDPQQVKA
ALHDLLVELLTPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV
TVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1155 bp

>NTDB_id=1011732 LYX99_RS19365 WP_021163045.1 510424..511578(-) (pilA) [Burkholderia cepacia strain JK11]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCGGCGGAATCGCAATCGGCCGACGCGCAGCAAAC
GGACGAACCGTCCGATGCGCCCGCGGTCGAGGCCCCGCCTGCGGCCGAGGTGCCGCAAGCGCCCGCGCAACCGGCCGCGC
CGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGGCGCGACGAAGTCGTCGAGACGGTCGAAATCGTTCCGCCGCCG
CTGCAGGACGCCACCGCGAAGAAATCGTGGCTCGCCCGCCTGAAAACGGGGCTTGCCAAGACGGGCTCGAGCATCACCGG
CGTCTTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGACGCGGGCGTCG
ACGCGACCGAGTACCTGCTCGGCGCGCTACGCGAAAAGGTGCGCGCGGGCCGCCTGACCGACCCGCAGCAGGTGAAGGCC
GCGCTGCACGACCTGCTCGTCGAGTTGCTGACGCCGCTCGAGAAGTCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGAT
GATGATCACCGGCGTGAACGGTGCGGGCAAGACGACCAGCATCGGCAAGCTCGCAAAGCATCTGCAGAGCTTCGACCAGT
CGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAACGTG
ACGGTCGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGA
CGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTCCACCTGATGGAAGAGCTGAAGAAGGTGAAGCGCGTGA
TCTCGAAGGCGCACGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCACGCAG
GTCAAGGCATTCGACGACGCGCTCGGCCTCACCGGTCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCT
CGCCGCGATCGCGCGGCAGCGCCCGGTGCCGGTCTACTTCATCGGTGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCA
GCGCAGTCGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (102-164)

• SRP54-type protein, GTPase domain (SRP54) (185-384)

3D structure

• AlphaFold DB: U2H1M2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.846	100	0.583