Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W94_RS07725 Genome accession   NZ_LR822041
Coordinates   1479333..1480076 (-) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus isolate STH_CIRM_1122     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474333..1485076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W94_RS07695 (STHERMO_1696) - 1474604..1475548 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H1W94_RS07700 (STHERMO_1697) sepM 1475633..1476709 (-) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  H1W94_RS07705 (STHERMO_1698) coaD 1476687..1477184 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  H1W94_RS07710 (STHERMO_1699) rsmD 1477218..1477817 (-) 600 WP_011227500.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1W94_RS07715 (STHERMO_1700) trxB 1477908..1478861 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H1W94_RS07720 (STHERMO_1701) - 1478894..1479118 (-) 225 WP_011226468.1 DUF4059 family protein -
  H1W94_RS07725 (STHERMO_1702) amiE 1479333..1480076 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  H1W94_RS07730 (STHERMO_1703) - 1480076..1480822 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  H1W94_RS07735 (STHERMO_1704) - 1481211..1482038 (-) 828 WP_041827091.1 transporter substrate-binding domain-containing protein -
  H1W94_RS07740 (STHERMO_1705) - 1482619..1482852 (-) 234 WP_002947030.1 hypothetical protein -
  H1W94_RS07745 (STHERMO_1706) dinB 1483138..1484241 (-) 1104 WP_011227504.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=1011690 H1W94_RS07725 WP_011226469.1 1479333..1480076(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1122]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1011690 H1W94_RS07725 WP_011226469.1 1479333..1480076(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1122]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364