Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABS324_RS23875 Genome accession   NZ_CP158496
Coordinates   4656903..4657226 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain NBNZ-2162     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4651903..4662226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS23860 (ABS324_23860) - 4652417..4653784 (-) 1368 WP_044795467.1 aldehyde dehydrogenase -
  ABS324_RS23865 (ABS324_23865) inhA1 4653956..4656346 (-) 2391 WP_016117439.1 M6 family metalloprotease immune inhibitor InhA1 -
  ABS324_RS23870 (ABS324_23870) - 4656689..4656823 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  ABS324_RS23875 (ABS324_23875) sinR 4656903..4657226 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  ABS324_RS23880 (ABS324_23880) calY 4657299..4657892 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  ABS324_RS23885 (ABS324_23885) - 4658280..4659122 (-) 843 WP_141541487.1 DUF4047 domain-containing protein -
  ABS324_RS23890 (ABS324_23890) - 4659257..4659844 (-) 588 WP_000172854.1 CalY family protein -
  ABS324_RS23895 (ABS324_23895) sipW 4659905..4660474 (-) 570 WP_000767793.1 signal peptidase I SipW -
  ABS324_RS23900 (ABS324_23900) - 4660666..4661952 (-) 1287 WP_098616850.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1011623 ABS324_RS23875 WP_000578885.1 4656903..4657226(+) (sinR) [Bacillus cereus strain NBNZ-2162]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1011623 ABS324_RS23875 WP_000578885.1 4656903..4657226(+) (sinR) [Bacillus cereus strain NBNZ-2162]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment