Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABS324_RS22555 Genome accession   NZ_CP158496
Coordinates   4414930..4415532 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain NBNZ-2162     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4409930..4420532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS22510 (ABS324_22510) gpsB 4410260..4410595 (-) 336 WP_000622431.1 cell division regulator GpsB -
  ABS324_RS22515 (ABS324_22515) - 4410694..4411248 (-) 555 WP_000862912.1 DUF1273 domain-containing protein -
  ABS324_RS22520 (ABS324_22520) - 4411305..4411733 (-) 429 WP_000546270.1 CotD family spore coat protein -
  ABS324_RS22525 (ABS324_22525) - 4411889..4412386 (-) 498 WP_086408957.1 YppG family protein -
  ABS324_RS22530 (ABS324_22530) - 4412564..4412755 (+) 192 WP_000242652.1 YppF family protein -
  ABS324_RS22535 (ABS324_22535) - 4412782..4413126 (-) 345 WP_000786940.1 YppE family protein -
  ABS324_RS22540 (ABS324_22540) - 4413142..4413384 (-) 243 WP_001252036.1 hypothetical protein -
  ABS324_RS22545 (ABS324_22545) - 4413470..4413649 (+) 180 WP_001987054.1 hypothetical protein -
  ABS324_RS22550 (ABS324_22550) - 4413801..4414826 (-) 1026 WP_098616273.1 DUF2515 domain-containing protein -
  ABS324_RS22555 (ABS324_22555) recU 4414930..4415532 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  ABS324_RS22560 (ABS324_22560) - 4415599..4418307 (+) 2709 WP_098616274.1 PBP1A family penicillin-binding protein -
  ABS324_RS22565 (ABS324_22565) - 4418333..4418851 (-) 519 WP_016117494.1 YpoC family protein -
  ABS324_RS22570 (ABS324_22570) nth 4418855..4419502 (-) 648 WP_098616275.1 endonuclease III -
  ABS324_RS22575 (ABS324_22575) dnaD 4419518..4420225 (-) 708 WP_000728552.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=1011621 ABS324_RS22555 WP_000155598.1 4414930..4415532(+) (recU) [Bacillus cereus strain NBNZ-2162]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1011621 ABS324_RS22555 WP_000155598.1 4414930..4415532(+) (recU) [Bacillus cereus strain NBNZ-2162]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment