Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABS324_RS20705 Genome accession   NZ_CP158496
Coordinates   4046325..4046612 (-) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain NBNZ-2162     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4041325..4051612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS20670 (ABS324_20670) - 4041536..4041883 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  ABS324_RS20675 (ABS324_20675) - 4041968..4042192 (+) 225 WP_000162602.1 hypothetical protein -
  ABS324_RS20680 (ABS324_20680) - 4042232..4042438 (-) 207 WP_001101741.1 hypothetical protein -
  ABS324_RS20685 (ABS324_20685) - 4042487..4043662 (-) 1176 WP_098616388.1 MFS transporter -
  ABS324_RS20690 (ABS324_20690) - 4043710..4044645 (-) 936 WP_098595337.1 aldo/keto reductase -
  ABS324_RS20695 (ABS324_20695) - 4044752..4045060 (+) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  ABS324_RS20700 (ABS324_20700) - 4045102..4046049 (-) 948 WP_098616389.1 serine protease -
  ABS324_RS20705 (ABS324_20705) abrB 4046325..4046612 (-) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABS324_RS20710 (ABS324_20710) - 4046728..4048608 (-) 1881 WP_098616390.1 ABC transporter permease -
  ABS324_RS20715 (ABS324_20715) nadE 4048878..4049696 (+) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  ABS324_RS20720 (ABS324_20720) - 4049746..4050207 (-) 462 WP_000024999.1 NUDIX hydrolase -
  ABS324_RS20725 (ABS324_20725) - 4050239..4050436 (-) 198 WP_001048102.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=1011620 ABS324_RS20705 WP_000648325.1 4046325..4046612(-) (abrB) [Bacillus cereus strain NBNZ-2162]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1011620 ABS324_RS20705 WP_000648325.1 4046325..4046612(-) (abrB) [Bacillus cereus strain NBNZ-2162]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGTATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment