Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABS324_RS18575 Genome accession   NZ_CP158496
Coordinates   3634102..3634380 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain NBNZ-2162     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629102..3639380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS18560 (ABS324_18560) - 3630593..3631252 (-) 660 WP_000876939.1 CatB-related O-acetyltransferase -
  ABS324_RS18565 (ABS324_18565) - 3631505..3632263 (-) 759 WP_098616544.1 TSUP family transporter -
  ABS324_RS18570 (ABS324_18570) - 3632331..3633581 (-) 1251 WP_098616543.1 hypothetical protein -
  ABS324_RS18575 (ABS324_18575) abrB 3634102..3634380 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABS324_RS18580 (ABS324_18580) - 3634521..3635399 (-) 879 WP_098616542.1 helix-turn-helix domain-containing protein -
  ABS324_RS18585 (ABS324_18585) - 3635776..3636027 (+) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  ABS324_RS18590 (ABS324_18590) - 3636268..3636870 (-) 603 WP_000517260.1 hypothetical protein -
  ABS324_RS18595 (ABS324_18595) - 3636896..3637705 (-) 810 WP_000664542.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=1011618 ABS324_RS18575 WP_000842216.1 3634102..3634380(-) (abrB) [Bacillus cereus strain NBNZ-2162]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1011618 ABS324_RS18575 WP_000842216.1 3634102..3634380(-) (abrB) [Bacillus cereus strain NBNZ-2162]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment