Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACKTTY_RS08430 Genome accession   NZ_AP027463
Coordinates   1799135..1800943 (-) Length   602 a.a.
NCBI ID   WP_308703385.1    Uniprot ID   -
Organism   Lactiplantibacillus brownii strain MH-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794135..1805943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTTY_RS08410 (MH1LPH_16500) - 1794872..1795675 (-) 804 WP_308703381.1 NAD kinase -
  ACKTTY_RS08415 (MH1LPH_16510) - 1795672..1796337 (-) 666 WP_308703382.1 GTP pyrophosphokinase family protein -
  ACKTTY_RS08420 (MH1LPH_16520) - 1796631..1797260 (+) 630 WP_308703383.1 DsbA family protein -
  ACKTTY_RS08425 (MH1LPH_16530) - 1797449..1799107 (+) 1659 WP_308703384.1 IS1182 family transposase -
  ACKTTY_RS08430 (MH1LPH_16540) pepF 1799135..1800943 (-) 1809 WP_308703385.1 oligoendopeptidase F Regulator
  ACKTTY_RS08435 (MH1LPH_16550) - 1801017..1802102 (-) 1086 WP_308703386.1 competence protein CoiA family protein -
  ACKTTY_RS08440 (MH1LPH_16560) - 1802196..1802927 (-) 732 WP_308703387.1 adaptor protein MecA -
  ACKTTY_RS08445 (MH1LPH_16570) spxA 1803066..1803464 (-) 399 WP_308703388.1 transcriptional regulator SpxA -
  ACKTTY_RS08450 (MH1LPH_16580) - 1803755..1804498 (-) 744 WP_308703389.1 MBL fold metallo-hydrolase -
  ACKTTY_RS08455 (MH1LPH_16590) - 1804629..1805129 (+) 501 WP_308703390.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67187.33 Da        Isoelectric Point: 5.3237

>NTDB_id=101161 ACKTTY_RS08430 WP_308703385.1 1799135..1800943(-) (pepF) [Lactiplantibacillus brownii strain MH-1]
MGATKQLPTRAAVPVQLTWDLTPIYATTAAYEADVNKIKASLASVAALKTAFTDSATTVLAGVQGVLDLTRRLEKVAVYA
SLKSDQDTGNSANQALDDQAGSLTAKVSAATAWLEPAILQLTSAQLDQFLDENVELRDYRHFLDTIRLQKGHVLSEGEEA
LLAGASDIFDASAKTFGVLTNADFDFPTVHDDQGEPVKLSQGVYSVLLASVKPAVRREAFSALYQVYSQFRRTLASTLAS
QVKADNFDAQAHHYADARTAAMATDQIPTTVYDTLVNSVNDHLDLLHRYVALRKSILKVDALHMYDMYTPLTGKPELTYT
YEQAQATALKALKVLGPDYVKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYILLNWQDNIDNLYTLVHEMGHSMHS
YQTTHHQPYQYGDYSIFVAEIASTTNENLLTDYFLATETDPKIRAYVLNYYLDGFKGTVYRQTQFAEFEQWLHTQAAAGE
SLTADRLSEHYLALNKHYYGDNVVSDPQIADEWARIPHFYYDYYVYQYATGFAAASTLAEHITTKQPDAVKKYLSYLQAG
SSEFPIEVMRNAGVDMTKTAYLDAAFKVFEQRLTEFESLIKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=101161 ACKTTY_RS08430 WP_308703385.1 1799135..1800943(-) (pepF) [Lactiplantibacillus brownii strain MH-1]
ATGGGTGCAACAAAACAACTACCAACTCGAGCGGCGGTACCAGTTCAATTAACCTGGGATCTGACCCCAATCTATGCCAC
GACGGCTGCTTATGAGGCGGATGTCAATAAAATAAAGGCCAGTTTAGCCTCGGTGGCCGCGTTAAAAACCGCTTTTACAG
ACTCAGCGACAACCGTGCTTGCGGGTGTGCAAGGCGTTTTAGACTTAACACGTCGTTTGGAAAAAGTGGCCGTTTACGCC
AGCTTAAAGAGTGATCAGGATACGGGGAATAGCGCGAATCAGGCCTTGGATGATCAAGCTGGAAGTTTAACGGCGAAAGT
TTCCGCCGCAACGGCCTGGTTGGAGCCCGCAATCTTACAATTAACATCGGCACAATTAGATCAATTCTTAGATGAAAATG
TTGAGTTACGTGATTATCGTCATTTTTTGGATACGATCCGGTTACAAAAAGGCCATGTTTTATCTGAAGGTGAAGAAGCG
CTATTAGCCGGTGCAAGCGATATTTTTGATGCCTCGGCGAAGACCTTTGGCGTGTTAACCAATGCTGATTTCGACTTTCC
GACTGTTCATGATGATCAGGGCGAACCAGTTAAATTATCGCAGGGTGTCTACAGCGTTTTGCTGGCCTCGGTTAAGCCGG
CAGTTAGACGAGAAGCTTTTAGTGCATTGTATCAAGTTTACTCACAGTTTCGGCGGACACTGGCTTCAACTTTGGCGAGT
CAAGTGAAAGCGGATAATTTTGATGCTCAAGCCCATCATTATGCGGATGCACGAACGGCTGCGATGGCTACTGATCAAAT
TCCAACGACCGTCTACGACACTTTAGTGAACTCGGTGAACGATCACTTAGACTTATTGCATCGCTATGTTGCGTTGCGCA
AGTCGATCTTAAAAGTCGATGCGTTACATATGTACGATATGTATACGCCATTGACGGGCAAACCAGAACTCACCTATACC
TACGAACAAGCTCAAGCAACGGCACTTAAAGCCTTAAAAGTCTTAGGACCAGATTACGTTAAACATGTTAAGACAGCATT
TGCTTCCCGCTGGATTGACGTGGTTGAAAATCAAGGCAAACGTAGCGGGGCTTATTCTTCGGGAATGTATGATACGGCGC
CATATATCTTGCTTAATTGGCAGGATAATATTGATAATTTATACACGCTAGTGCATGAAATGGGGCACAGTATGCATTCT
TACCAAACGACGCATCATCAGCCTTATCAATACGGGGATTATTCGATTTTTGTGGCGGAAATTGCATCGACAACGAATGA
AAATTTGTTAACGGACTATTTCTTGGCAACTGAAACTGATCCTAAAATCCGAGCATATGTTTTAAATTACTATCTCGATG
GTTTTAAGGGGACCGTTTACCGTCAGACCCAGTTTGCTGAGTTTGAACAATGGTTGCATACGCAGGCGGCTGCTGGGGAG
TCCCTTACCGCGGATCGACTGTCAGAGCACTATCTTGCCCTAAACAAACATTATTACGGGGACAACGTGGTCAGTGATCC
GCAGATTGCGGATGAGTGGGCGCGAATTCCACATTTTTATTATGATTATTATGTTTATCAGTATGCTACTGGCTTTGCAG
CGGCTTCAACCTTAGCGGAACACATCACGACAAAGCAACCGGATGCGGTTAAAAAGTATCTGAGCTATTTACAAGCGGGA
TCGTCTGAATTTCCGATTGAAGTGATGCGCAATGCGGGCGTTGATATGACGAAAACAGCATATCTGGATGCGGCCTTTAA
GGTGTTTGAACAGCGTTTAACAGAATTTGAAAGTTTGATCAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(208-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.671

0.492

Multiple sequence alignment