Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABS324_RS05205 Genome accession   NZ_CP158496
Coordinates   1040105..1041454 (+) Length   449 a.a.
NCBI ID   WP_098616232.1    Uniprot ID   -
Organism   Bacillus cereus strain NBNZ-2162     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1035105..1046454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS05185 (ABS324_05185) - 1035389..1035703 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  ABS324_RS05190 (ABS324_05190) - 1035852..1037264 (+) 1413 WP_142323084.1 C40 family peptidase -
  ABS324_RS05195 (ABS324_05195) - 1038313..1038522 (+) 210 WP_269769369.1 hypothetical protein -
  ABS324_RS05200 (ABS324_05200) - 1038668..1039738 (+) 1071 WP_061139627.1 endo-1,4-beta-xylanase -
  ABS324_RS05205 (ABS324_05205) comFA 1040105..1041454 (+) 1350 WP_098616232.1 ATP-dependent helicase ComFA Machinery gene
  ABS324_RS05210 (ABS324_05210) - 1041454..1042158 (+) 705 WP_033683590.1 ComF family protein -
  ABS324_RS05215 (ABS324_05215) cspC 1042285..1042482 (+) 198 WP_001990088.1 cold shock protein CspC -
  ABS324_RS05220 (ABS324_05220) raiA 1042801..1043343 (+) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  ABS324_RS05225 (ABS324_05225) - 1043748..1044221 (+) 474 WP_000023377.1 hypothetical protein -
  ABS324_RS05230 (ABS324_05230) - 1044339..1044908 (+) 570 WP_061664408.1 hypothetical protein -
  ABS324_RS05235 (ABS324_05235) - 1044936..1045724 (+) 789 WP_000120044.1 hypothetical protein -
  ABS324_RS05240 (ABS324_05240) - 1045711..1046406 (+) 696 WP_098616233.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51171.02 Da        Isoelectric Point: 9.8787

>NTDB_id=1011598 ABS324_RS05205 WP_098616232.1 1040105..1041454(+) (comFA) [Bacillus cereus strain NBNZ-2162]
MLSGKQLLLEELSSDLQRELNDLKKKGEIVCVQVVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIQVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVHAEDPERKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1011598 ABS324_RS05205 WP_098616232.1 1040105..1041454(+) (comFA) [Bacillus cereus strain NBNZ-2162]
ATGCTATCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGTTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCATCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATACAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACATGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTACATGC
AGAAGATCCGGAGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA Latilactobacillus sakei subsp. sakei 23K

41.439

89.755

0.372

Multiple sequence alignment