Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABS324_RS03510 Genome accession   NZ_CP158496
Coordinates   685300..685584 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain NBNZ-2162     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 680300..690584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS03495 (ABS324_03495) rnmV 681127..681684 (-) 558 WP_000692835.1 ribonuclease M5 -
  ABS324_RS03500 (ABS324_03500) - 681899..682666 (-) 768 WP_086409622.1 TatD family hydrolase -
  ABS324_RS03505 (ABS324_03505) metG 682833..684842 (-) 2010 WP_071699964.1 methionine--tRNA ligase -
  ABS324_RS03510 (ABS324_03510) abrB 685300..685584 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABS324_RS03515 (ABS324_03515) rsmI 685605..686480 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABS324_RS03520 (ABS324_03520) - 686449..686739 (-) 291 WP_061663944.1 GIY-YIG nuclease family protein -
  ABS324_RS03525 (ABS324_03525) - 686726..687466 (-) 741 WP_016118985.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABS324_RS03530 (ABS324_03530) yabA 687549..687899 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  ABS324_RS03535 (ABS324_03535) - 687914..688741 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  ABS324_RS03540 (ABS324_03540) holB 688747..689730 (-) 984 WP_098617285.1 DNA polymerase III subunit delta' -
  ABS324_RS03545 (ABS324_03545) tmk 689766..690392 (-) 627 WP_000677214.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=1011590 ABS324_RS03510 WP_000843036.1 685300..685584(+) (abrB) [Bacillus cereus strain NBNZ-2162]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1011590 ABS324_RS03510 WP_000843036.1 685300..685584(+) (abrB) [Bacillus cereus strain NBNZ-2162]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment