Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACKTTY_RS06435 Genome accession   NZ_AP027463
Coordinates   1391426..1393120 (+) Length   564 a.a.
NCBI ID   WP_308703019.1    Uniprot ID   -
Organism   Lactiplantibacillus brownii strain MH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386426..1398120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTTY_RS06405 (MH1LPH_12480) - 1386669..1387529 (+) 861 WP_308703013.1 tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein -
  ACKTTY_RS06410 (MH1LPH_12490) xseA 1387522..1388874 (+) 1353 WP_308703014.1 exodeoxyribonuclease VII large subunit -
  ACKTTY_RS06415 (MH1LPH_12500) - 1388867..1389106 (+) 240 WP_308703015.1 exodeoxyribonuclease VII small subunit -
  ACKTTY_RS06420 (MH1LPH_12510) - 1389099..1389989 (+) 891 WP_308703016.1 farnesyl diphosphate synthase -
  ACKTTY_RS06425 (MH1LPH_12520) - 1390003..1390818 (+) 816 WP_308703017.1 TlyA family RNA methyltransferase -
  ACKTTY_RS06430 (MH1LPH_12530) - 1390904..1391362 (+) 459 WP_308703018.1 ArgR family transcriptional regulator -
  ACKTTY_RS06435 (MH1LPH_12540) recN 1391426..1393120 (+) 1695 WP_308703019.1 DNA repair protein RecN Machinery gene
  ACKTTY_RS06440 (MH1LPH_12550) - 1393327..1394553 (+) 1227 Protein_1243 betaine/proline/choline family ABC transporter ATP-binding protein -
  ACKTTY_RS06445 (MH1LPH_12570) - 1394550..1395179 (+) 630 WP_308703021.1 ABC transporter permease -
  ACKTTY_RS06450 (MH1LPH_12580) - 1395192..1396127 (+) 936 WP_308703022.1 osmoprotectant ABC transporter substrate-binding protein -
  ACKTTY_RS06455 (MH1LPH_12590) - 1396127..1396780 (+) 654 WP_308703023.1 ABC transporter permease -
  ACKTTY_RS06460 (MH1LPH_12600) - 1396946..1397281 (-) 336 WP_308703024.1 hypothetical protein -
  ACKTTY_RS06465 (MH1LPH_12610) gmk 1397481..1398101 (+) 621 WP_137607492.1 guanylate kinase -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 62813.22 Da        Isoelectric Point: 4.9864

>NTDB_id=101156 ACKTTY_RS06435 WP_308703019.1 1391426..1393120(+) (recN) [Lactiplantibacillus brownii strain MH-1]
MLQELSITNFAIIEQLDIAFENGMTVLTGETGAGKSIIIDAVGLLAGGRGSQEFIRTGADKAVLQGMFILPADGVTAHML
DEAGIDHGDNTVILQREIAKSGRNTCRINGMLVNTTTLKRIGETIVDIHGQNEHQELMQPDKHLGLLDEFAAHKIHKLKA
QYTQEYEAYQQLNQELRQKNANEKEWAQRLDMLNFQVEEISAAQVKVGEEADLTAERDRLDNYQTINQALQQSYNLLVAE
EETPGAVDVVGEAMNALEPIANLDSAFNDITVNVKNAFYALQDATGQISNQLDLQEFDEGRLDEIEQRLDVLSQLKRKYG
DSEQQILDYYQKISTELAKMTDSEENSEGLSQRVADKKAALLKTGQALSDKRRTCAKSLQRQIHQELKDLYMDKAIFEVR
FKPTKGQIYRSGLDSVEFYIQTNPGERMRPLAKIASGGELSRMMLALKTIFSESQGITSIIFDEVDTGVSGRVAQAIAEK
ISGIAKFSQVLCITHLPQVAAMADHHYFIAKKITGRRTKTSVTKLAQPDRVQELARMLAGTKVTKLSLEHAEELLRLAGE
EKVE

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=101156 ACKTTY_RS06435 WP_308703019.1 1391426..1393120(+) (recN) [Lactiplantibacillus brownii strain MH-1]
GTGCTACAAGAATTATCAATTACCAATTTTGCCATTATTGAACAATTGGATATTGCCTTTGAAAATGGCATGACGGTGTT
AACTGGGGAGACTGGTGCCGGGAAATCAATCATTATTGATGCGGTCGGCTTGCTAGCTGGTGGTCGTGGTTCACAAGAAT
TCATCCGTACTGGGGCTGATAAAGCGGTGCTACAAGGCATGTTTATTTTACCAGCAGATGGGGTAACCGCCCACATGTTA
GATGAGGCGGGCATCGATCATGGTGATAACACCGTTATTTTACAACGTGAAATTGCCAAGAGTGGTCGCAATACTTGCCG
AATCAACGGCATGCTGGTCAATACGACGACTTTAAAACGGATTGGTGAAACCATCGTCGATATTCACGGCCAAAATGAAC
ATCAAGAATTGATGCAACCAGATAAACATCTTGGTTTACTGGATGAGTTTGCGGCGCATAAAATTCATAAACTGAAAGCA
CAATATACGCAAGAATATGAAGCCTATCAACAACTTAATCAAGAACTACGGCAAAAAAATGCCAACGAAAAAGAATGGGC
TCAGCGACTGGATATGCTCAATTTTCAAGTTGAAGAAATTTCCGCAGCGCAAGTTAAAGTGGGTGAGGAAGCAGATCTGA
CGGCAGAACGCGACCGGTTGGATAATTATCAGACCATCAACCAAGCACTTCAACAAAGCTATAACTTGTTGGTGGCGGAA
GAAGAAACTCCGGGCGCTGTTGATGTCGTCGGGGAAGCGATGAATGCTTTGGAGCCCATCGCTAACTTGGATTCGGCATT
TAACGACATCACTGTAAATGTTAAAAATGCTTTTTATGCCTTACAGGATGCGACGGGACAAATCTCCAATCAGCTGGATC
TGCAGGAATTTGACGAAGGCCGTTTAGATGAAATCGAGCAACGCTTAGATGTACTCAGTCAACTGAAGCGCAAGTATGGC
GATTCAGAACAACAAATTTTGGATTATTATCAAAAAATTTCGACAGAACTCGCTAAAATGACAGATTCCGAAGAAAATAG
TGAAGGTCTGTCGCAACGGGTGGCCGATAAGAAGGCCGCGTTATTGAAAACTGGGCAGGCACTTTCTGATAAACGCCGCA
CCTGTGCTAAGAGTTTACAGCGACAAATCCACCAGGAATTAAAAGATTTATACATGGATAAAGCCATTTTTGAAGTTCGT
TTCAAACCAACTAAGGGCCAGATTTACCGCAGCGGGCTGGACAGTGTTGAATTCTATATTCAAACGAACCCTGGTGAGCG
GATGCGACCACTCGCAAAAATTGCTTCTGGTGGGGAATTGTCGCGGATGATGCTGGCCTTAAAGACGATCTTTTCAGAAT
CCCAAGGAATTACCAGTATTATTTTTGATGAGGTTGACACAGGTGTCAGTGGTCGGGTCGCACAGGCGATTGCGGAAAAA
ATCAGCGGCATTGCGAAATTTTCACAAGTCCTCTGTATTACGCATTTACCACAAGTGGCGGCAATGGCCGATCATCATTA
CTTTATTGCGAAAAAGATTACGGGTCGTCGGACTAAGACGAGTGTTACAAAATTAGCTCAGCCGGATCGGGTACAAGAAT
TGGCCCGCATGCTGGCCGGGACTAAAGTCACCAAGCTATCTTTGGAACATGCCGAAGAGCTATTACGGCTAGCTGGAGAA
GAAAAAGTCGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

46.724

100

0.48

Multiple sequence alignment