Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H1W87_RS06280 Genome accession   NZ_LR822037
Coordinates   1190236..1190916 (-) Length   226 a.a.
NCBI ID   WP_003094822.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185236..1195916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS06250 (STHERMO_1384) - 1185444..1185893 (-) 450 WP_180478093.1 cytidine deaminase family protein -
  H1W87_RS06255 (STHERMO_1385) - 1185904..1186083 (-) 180 Protein_1177 ABC transporter permease -
  H1W87_RS06260 (STHERMO_1386) - 1186085..1186282 (-) 198 Protein_1178 YkgJ family cysteine cluster protein -
  H1W87_RS06265 (STHERMO_1387) - 1186367..1188367 (-) 2001 WP_180478095.1 ABC transporter permease -
  H1W87_RS06270 (STHERMO_1388) - 1188369..1189127 (-) 759 WP_011227353.1 ABC transporter ATP-binding protein -
  H1W87_RS06275 (STHERMO_1389) - 1189272..1190246 (-) 975 WP_375708551.1 sensor histidine kinase -
  H1W87_RS06280 (STHERMO_1390) braR 1190236..1190916 (-) 681 WP_003094822.1 response regulator transcription factor Regulator
  H1W87_RS06285 (STHERMO_1391) - 1191367..1191947 (+) 581 Protein_1183 xanthine phosphoribosyltransferase -
  H1W87_RS09975 (STHERMO_1392) - 1192036..1192506 (+) 471 WP_260213438.1 solute carrier family 23 protein -
  H1W87_RS09980 (STHERMO_1394) - 1192542..1193216 (+) 675 WP_260213439.1 solute carrier family 23 protein -
  H1W87_RS06295 (STHERMO_1395) - 1193344..1194693 (+) 1350 WP_180478097.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26122.50 Da        Isoelectric Point: 5.0092

>NTDB_id=1011365 H1W87_RS06280 WP_003094822.1 1190236..1190916(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1121]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1011365 H1W87_RS06280 WP_003094822.1 1190236..1190916(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTCGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504