Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABR335_RS16740 Genome accession   NZ_CP158453
Coordinates   3511782..3513152 (-) Length   456 a.a.
NCBI ID   WP_014096526.1    Uniprot ID   A0A133KUJ2
Organism   Heyndrickxia faecalis strain TCI803     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3506782..3518152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR335_RS16720 (ABR335_16720) gltX 3507111..3508571 (-) 1461 WP_061086775.1 glutamate--tRNA ligase -
  ABR335_RS16725 (ABR335_16725) ispF 3509124..3509600 (-) 477 WP_014096523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABR335_RS16730 (ABR335_16730) ispD 3509603..3510283 (-) 681 WP_014096524.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABR335_RS16735 (ABR335_16735) - 3510350..3511435 (-) 1086 WP_014096525.1 PIN/TRAM domain-containing protein -
  ABR335_RS16740 (ABR335_16740) radA 3511782..3513152 (-) 1371 WP_014096526.1 DNA repair protein RadA Machinery gene
  ABR335_RS16745 (ABR335_16745) clpC 3513385..3515835 (-) 2451 WP_014096528.1 ATP-dependent protease ATP-binding subunit ClpC -
  ABR335_RS16750 (ABR335_16750) - 3515852..3516919 (-) 1068 WP_014096529.1 protein arginine kinase -
  ABR335_RS16755 (ABR335_16755) - 3516919..3517464 (-) 546 WP_014096530.1 UvrB/UvrC motif-containing protein -
  ABR335_RS16760 (ABR335_16760) - 3517484..3517945 (-) 462 WP_013858048.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49792.20 Da        Isoelectric Point: 7.1420

>NTDB_id=1011309 ABR335_RS16740 WP_014096526.1 3511782..3513152(-) (radA) [Heyndrickxia faecalis strain TCI803]
MAKKTVKFVCQNCGYESPKWMGKCPQCSQWNQMVEEAETPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVVIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVSTIQEALEAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1011309 ABR335_RS16740 WP_014096526.1 3511782..3513152(-) (radA) [Heyndrickxia faecalis strain TCI803]
ATGGCAAAAAAAACCGTAAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAGCCAGTGGAACCAGATGGTGGAGGAAGCGGAGACGCCAAAACGGAGGGGCTTTTTTTTACATCCGGAGCCTGGAAATG
AAACCAAAGCGGCACCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACAAAGGTGGATTTTGGAGAGCTGAACCGT
GTCCTCGGCGGCGGCATTGTTGCCGGATCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACGCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATTTCCGGGGAGGAATCGGCGAAACAGACGAAGT
TAAGGGCGGACCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAATCCCGGCTTTGTGGTCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAACGTGGCCATCTTTATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCACGTGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAACGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGTTCGACGAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTGGCTTCCATTGAGGGGACGCGCCCGGTCCTTGTCGAGATCCAGGCGCTGTTGGCCCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGACTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGTCTTTT
GATTCAGAACCAGGATGCTTATTTAAAAGTCGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCTG
TCAGCGTGGCATCCAGTTTTCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAGGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCAGGATTGAGCAGCGCGTCCAGGAAGCGGCAAAACTTGGTTTCCGGCGGGCGATCATCCCGAAAAA
TAATATGGGCGGGTGGACGCCGCCAAAAGAGATTCAAGTGATCGGCGTCTCCACAATCCAGGAAGCTTTGGAAGCGGCAC
TCGGCGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133KUJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.024

100

0.715
  radA Streptococcus mitis NCTC 12261

62.971

98.904

0.623
  radA Streptococcus mitis SK321

62.749

98.904

0.621
  radA Streptococcus pneumoniae Rx1

62.749

98.904

0.621
  radA Streptococcus pneumoniae D39

62.749

98.904

0.621
  radA Streptococcus pneumoniae R6

62.749

98.904

0.621
  radA Streptococcus pneumoniae TIGR4

62.749

98.904

0.621

Multiple sequence alignment