Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABR335_RS13255 Genome accession   NZ_CP158453
Coordinates   2716061..2717011 (-) Length   316 a.a.
NCBI ID   WP_276211039.1    Uniprot ID   -
Organism   Heyndrickxia faecalis strain TCI803     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2711061..2722011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR335_RS13225 (ABR335_13225) - 2711708..2712400 (-) 693 WP_013858648.1 response regulator transcription factor -
  ABR335_RS13230 (ABR335_13230) - 2712511..2712813 (-) 303 WP_014095855.1 DUF5316 domain-containing protein -
  ABR335_RS13235 (ABR335_13235) - 2713120..2713356 (+) 237 WP_026104642.1 4Fe-4S binding protein -
  ABR335_RS13240 (ABR335_13240) - 2713413..2714351 (-) 939 WP_046721395.1 siderophore ABC transporter substrate-binding protein -
  ABR335_RS13245 (ABR335_13245) - 2714366..2715124 (-) 759 WP_014095858.1 ABC transporter ATP-binding protein -
  ABR335_RS13250 (ABR335_13250) - 2715118..2716068 (-) 951 WP_277613376.1 iron chelate uptake ABC transporter family permease subunit -
  ABR335_RS13255 (ABR335_13255) ceuB 2716061..2717011 (-) 951 WP_276211039.1 ABC transporter permease Machinery gene
  ABR335_RS13260 (ABR335_13260) - 2717324..2718511 (-) 1188 WP_350346242.1 PDZ domain-containing protein -
  ABR335_RS13265 (ABR335_13265) - 2719259..2719468 (-) 210 WP_046721397.1 hypothetical protein -
  ABR335_RS13270 (ABR335_13270) - 2719718..2721154 (-) 1437 WP_017551675.1 S41 family peptidase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34438.55 Da        Isoelectric Point: 10.0424

>NTDB_id=1011304 ABR335_RS13255 WP_276211039.1 2716061..2717011(-) (ceuB) [Heyndrickxia faecalis strain TCI803]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLTLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1011304 ABR335_RS13255 WP_276211039.1 2716061..2717011(-) (ceuB) [Heyndrickxia faecalis strain TCI803]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATTTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCTCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATTCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCACTGGCTGGCACCTTGCTGTTCATGAAGATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCTCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTACCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment