Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABR335_RS12545 Genome accession   NZ_CP158453
Coordinates   2568318..2570132 (-) Length   604 a.a.
NCBI ID   WP_014095725.1    Uniprot ID   A0AAU7WDP7
Organism   Heyndrickxia faecalis strain TCI803     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2563318..2575132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR335_RS12525 (ABR335_12525) - 2563761..2564555 (+) 795 WP_104851317.1 lytic transglycosylase domain-containing protein -
  ABR335_RS12530 (ABR335_12530) - 2566138..2566539 (+) 402 WP_014095722.1 globin -
  ABR335_RS12535 (ABR335_12535) - 2566536..2567393 (+) 858 WP_014095723.1 ClpXP adapter SpxH family protein -
  ABR335_RS12540 (ABR335_12540) - 2567855..2568043 (+) 189 WP_014095724.1 hypothetical protein -
  ABR335_RS12545 (ABR335_12545) pepF 2568318..2570132 (-) 1815 WP_014095725.1 oligoendopeptidase F Regulator
  ABR335_RS12550 (ABR335_12550) - 2570200..2571426 (-) 1227 WP_225620976.1 competence protein CoiA -
  ABR335_RS12555 (ABR335_12555) mecA 2571676..2572335 (-) 660 WP_014095727.1 adaptor protein MecA -
  ABR335_RS12560 (ABR335_12560) spxA 2572695..2573090 (-) 396 WP_013858789.1 transcriptional regulator SpxA -
  ABR335_RS12565 (ABR335_12565) - 2573370..2574311 (-) 942 WP_013858788.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69499.07 Da        Isoelectric Point: 5.1940

>NTDB_id=1011295 ABR335_RS12545 WP_014095725.1 2568318..2570132(-) (pepF) [Heyndrickxia faecalis strain TCI803]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALSANHIPEKVYDQLVETVNKHLGLLHRYVALRKKALQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYYGTDTAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1011295 ABR335_RS12545 WP_014095725.1 2568318..2570132(-) (pepF) [Heyndrickxia faecalis strain TCI803]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAGCAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATAGACAGCAAAGCAAAAAGCCTTGC
TGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTGAACAATGCCGACCT
TGAGTTCCCGACCGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCAACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCACATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTTGGTTTGCTGCATCGGTATGTTG
CACTGCGCAAAAAAGCGCTGCAGCTTGATGAAGTGCATATGTATGATTTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTAACATATGAAAAAGCGAAAGAGATTGTGCTTGACGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
ACAGGCGTTTGAAAACCGCTGGATTGATGTGGTGGAAAATAAGGGAAAACGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCTATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCACTATTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTATTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTAACAGATGAGTATTATAAGCTGAACCAAAAATACTATGGTACGGATACCGC
CATTGATCAGGAAATCGGGCTAGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.013

0.5

Multiple sequence alignment