Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ABR335_RS07960 | Genome accession | NZ_CP158453 |
| Coordinates | 1664788..1665912 (+) | Length | 374 a.a. |
| NCBI ID | WP_017550534.1 | Uniprot ID | - |
| Organism | Heyndrickxia faecalis strain TCI803 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1659788..1670912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABR335_RS07930 (ABR335_07930) | - | 1661079..1661300 (+) | 222 | WP_013859652.1 | YqgQ family protein | - |
| ABR335_RS07935 (ABR335_07935) | - | 1661293..1662261 (+) | 969 | WP_014098016.1 | ROK family glucokinase | - |
| ABR335_RS07940 (ABR335_07940) | - | 1662566..1662739 (-) | 174 | WP_014098017.1 | DUF2759 domain-containing protein | - |
| ABR335_RS07945 (ABR335_07945) | - | 1662869..1663498 (+) | 630 | WP_014098018.1 | MBL fold metallo-hydrolase | - |
| ABR335_RS07950 (ABR335_07950) | - | 1663567..1663809 (-) | 243 | WP_014098019.1 | DUF2626 domain-containing protein | - |
| ABR335_RS07955 (ABR335_07955) | - | 1663887..1664594 (-) | 708 | WP_014098020.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| ABR335_RS07960 (ABR335_07960) | comGA | 1664788..1665912 (+) | 1125 | WP_017550534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABR335_RS07965 (ABR335_07965) | comGB | 1665914..1666876 (+) | 963 | WP_017550533.1 | competence type IV pilus assembly protein ComGB | - |
| ABR335_RS07970 (ABR335_07970) | comGC | 1666944..1667255 (+) | 312 | WP_014098023.1 | competence type IV pilus major pilin ComGC | - |
| ABR335_RS07975 (ABR335_07975) | comGD | 1667252..1667695 (+) | 444 | WP_014098024.1 | competence type IV pilus minor pilin ComGD | - |
| ABR335_RS07980 (ABR335_07980) | - | 1667682..1667990 (+) | 309 | WP_014098025.1 | type II secretion system protein | - |
| ABR335_RS07985 (ABR335_07985) | comGF | 1667953..1668438 (+) | 486 | WP_035184588.1 | competence type IV pilus minor pilin ComGF | - |
| ABR335_RS07990 (ABR335_07990) | comGG | 1668435..1668803 (+) | 369 | WP_014098027.1 | competence type IV pilus minor pilin ComGG | - |
| ABR335_RS07995 (ABR335_07995) | - | 1668800..1669357 (+) | 558 | WP_014098028.1 | shikimate kinase | - |
| ABR335_RS08000 (ABR335_08000) | - | 1669344..1669520 (+) | 177 | WP_014098029.1 | YqzE family protein | - |
| ABR335_RS08005 (ABR335_08005) | - | 1669553..1670344 (-) | 792 | WP_014098030.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 42365.91 Da Isoelectric Point: 9.5493
>NTDB_id=1011284 ABR335_RS07960 WP_017550534.1 1664788..1665912(+) (comGA) [Heyndrickxia faecalis strain TCI803]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEQ
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEQ
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR
Nucleotide
Download Length: 1125 bp
>NTDB_id=1011284 ABR335_RS07960 WP_017550534.1 1664788..1665912(+) (comGA) [Heyndrickxia faecalis strain TCI803]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTCATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGCATGTTGATTTTCAGCGGCCCAACCGGCAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAG
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGATCCTGTTGAAAAACAAAGCGATTCGTTTTTGCAGGTGCA
GGTAAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATTCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCACCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGCTGAAAGAAGCA
AAGGGGGAACAGGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTCATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGCATGTTGATTTTCAGCGGCCCAACCGGCAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAG
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGATCCTGTTGAAAAACAAAGCGATTCGTTTTTGCAGGTGCA
GGTAAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATTCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCACCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGCTGAAAGAAGCA
AAGGGGGAACAGGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.469 |
95.722 |
0.521 |