Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABR335_RS04280 Genome accession   NZ_CP158453
Coordinates   941193..942008 (+) Length   271 a.a.
NCBI ID   WP_061086975.1    Uniprot ID   A0AAU7WKY6
Organism   Heyndrickxia faecalis strain TCI803     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 936193..947008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR335_RS04250 (ABR335_04250) trpCF 936608..938032 (+) 1425 WP_350346614.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  ABR335_RS04255 (ABR335_04255) trpB 938010..939215 (+) 1206 WP_350346615.1 tryptophan synthase subunit beta -
  ABR335_RS04260 (ABR335_04260) - 939208..939612 (+) 405 WP_179234110.1 hypothetical protein -
  ABR335_RS04265 (ABR335_04265) trpA 939605..940396 (+) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  ABR335_RS04270 (ABR335_04270) - 940655..940837 (-) 183 WP_017551419.1 YfhD family protein -
  ABR335_RS04275 (ABR335_04275) - 940984..941106 (-) 123 WP_014097357.1 YfhE family protein -
  ABR335_RS04280 (ABR335_04280) recX 941193..942008 (+) 816 WP_061086975.1 recombination regulator RecX Regulator
  ABR335_RS04285 (ABR335_04285) - 941989..942306 (+) 318 WP_014097359.1 YfhH family protein -
  ABR335_RS04290 (ABR335_04290) mutY 942568..943686 (-) 1119 WP_350346616.1 A/G-specific adenine glycosylase -
  ABR335_RS04295 (ABR335_04295) - 943865..944845 (+) 981 WP_014097361.1 metal-dependent hydrolase -
  ABR335_RS04300 (ABR335_04300) - 944932..945090 (+) 159 WP_014097362.1 small, acid-soluble spore protein K -
  ABR335_RS04305 (ABR335_04305) - 945421..946296 (+) 876 WP_035190007.1 ABC transporter ATP-binding protein -
  ABR335_RS04310 (ABR335_04310) - 946274..946912 (+) 639 WP_350346617.1 ABC-2 transporter permease -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31474.20 Da        Isoelectric Point: 7.4569

>NTDB_id=1011272 ABR335_RS04280 WP_061086975.1 941193..942008(+) (recX) [Heyndrickxia faecalis strain TCI803]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAALPIEKDEEAEWEALLQHAEKAKRKYGRLSGYAYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=1011272 ABR335_RS04280 WP_061086975.1 941193..942008(+) (recX) [Heyndrickxia faecalis strain TCI803]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAATAATAAAGAACGATACAATATTTTTCTTGACGGCCAGTACCGATT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAAGATGATATCCGGAAAGGCGTTAATACTGCCATCCATTTTCTTTCCTATCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCACCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAACACAACACATAAAGGGCCTGTTGTTATTAGAAGGG
AACTCCAGCAAAAAGGCATTGCACCAGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCGGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCGCCTGAAGTGATTTCCGCAGCGATGGCGGCGCTCCCTATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGTAGACTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509

Multiple sequence alignment