Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABS648_RS05775 Genome accession   NZ_CP158373
Coordinates   1194861..1196222 (+) Length   453 a.a.
NCBI ID   WP_021218793.1    Uniprot ID   A0AAU7Y669
Organism   Pseudomonas solani strain T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189861..1201222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS05745 (ABS648_05730) - 1190717..1191199 (+) 483 WP_265167665.1 DUF934 domain-containing protein -
  ABS648_RS05750 (ABS648_05735) - 1191486..1193048 (+) 1563 WP_021218798.1 TerC family protein -
  ABS648_RS05755 (ABS648_05740) mscL 1193290..1193712 (-) 423 WP_031287489.1 large-conductance mechanosensitive channel protein MscL -
  ABS648_RS05760 (ABS648_05745) - 1193776..1194063 (-) 288 WP_021218796.1 DUF1272 domain-containing protein -
  ABS648_RS05765 (ABS648_05750) - 1194223..1194462 (+) 240 WP_021218795.1 DUF465 domain-containing protein -
  ABS648_RS05770 (ABS648_05755) - 1194540..1194821 (+) 282 WP_021218794.1 YdcH family protein -
  ABS648_RS05775 (ABS648_05760) radA 1194861..1196222 (+) 1362 WP_021218793.1 DNA repair protein RadA Machinery gene
  ABS648_RS05780 (ABS648_05765) - 1196226..1196594 (-) 369 WP_021218792.1 PilZ domain-containing protein -
  ABS648_RS05785 (ABS648_05770) - 1196648..1198819 (-) 2172 WP_350447833.1 hypothetical protein -
  ABS648_RS05790 (ABS648_05775) - 1198806..1200011 (-) 1206 WP_350447834.1 DUF3142 domain-containing protein -
  ABS648_RS05795 (ABS648_05780) - 1200231..1200737 (+) 507 WP_021218789.1 DUF3015 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48365.88 Da        Isoelectric Point: 7.4046

>NTDB_id=1011047 ABS648_RS05775 WP_021218793.1 1194861..1196222(+) (radA) [Pseudomonas solani strain T3]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETVIDGAAPPSGRAGWAGGQAQIKTLAEVSVEEMPRFSTASAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIASRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIATA
RVEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALIAAIMSSLRNRPLEHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPKGNAPKEAPPGLRVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1011047 ABS648_RS05775 WP_021218793.1 1194861..1196222(+) (radA) [Pseudomonas solani strain T3]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGATTG
CGGGGCCTGGAACACCCTGGTTGAAACCGTCATCGACGGCGCCGCACCCCCCAGCGGGCGCGCCGGCTGGGCCGGTGGCC
AGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATGCCGCGCTTTTCCACCGCCTCCGCCGAGCTCGACCGC
GTACTCGGTGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACCATTCTGTT
GCAGACCCTGTGCAACATCGCCTCGCGCTTCCCCGCGCTCTATGTCACCGGTGAGGAATCCCAGCAGCAGGTCGCCATGC
GCGCCCGCCGCCTCGGGCTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCCACCGCC
CGGGTGGAGAAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAATTGCAGTCCGCCCCCGGCGG
CGTGGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTCGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCGGGCCCGCGCGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAGGGCGAG
TCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTCGGTGCGGTCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTGAAGGAGGTTTCCAACCCGTCGGCGATCTTCCTCACCCGTGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TCATGGCCACCTGGGAAGGTTCGCGGCCGATGCTGGTGGAGGTGCAGGCCCTGGTGGACACCAGCCACCTGGCCAACCCG
CGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTATTGCACCGCCACGGCGGCATTCCCAC
CCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACGGCATCGGATCTGGCGCTGATCGCGG
CGATCATGTCGAGCCTGCGTAACCGCCCGCTGGAGCATGACCTGTTGGTGTTCGGCGAGGTGGGCCTGTCGGGCGAGGTG
CGCCCGGTACCGAGCGGCCAGGAGCGCCTGAAGGAGGCGGGCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAAGGGCAA
CGCCCCGAAGGAGGCGCCCCCGGGGCTGCGGGTGATTGCGGTGACGCGCCTGGAACAGGCGCTGGATGCCCTGTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

100

0.488
  radA Streptococcus pneumoniae Rx1

46.171

100

0.466
  radA Streptococcus pneumoniae R6

46.171

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.171

100

0.466
  radA Streptococcus pneumoniae D39

46.171

100

0.466
  radA Streptococcus mitis SK321

46.358

100

0.464
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461

Multiple sequence alignment