Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H1W90_RS04965 Genome accession   NZ_LR822033
Coordinates   957666..958736 (-) Length   356 a.a.
NCBI ID   WP_179966615.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952666..963736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS04950 (STHERMO_1105) pstB 953391..954149 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  H1W90_RS04955 (STHERMO_1106) phoU 954177..954830 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  H1W90_RS04960 (STHERMO_1107) - 954964..957504 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  H1W90_RS04965 (STHERMO_1108) xerS 957666..958736 (-) 1071 WP_179966615.1 tyrosine recombinase XerS Machinery gene
  H1W90_RS04970 (STHERMO_1110) - 958961..959950 (-) 990 WP_180480903.1 lipoate--protein ligase -
  H1W90_RS04975 (STHERMO_1111) - 960140..960808 (+) 669 WP_224112101.1 hypothetical protein -
  H1W90_RS04980 (STHERMO_1112) - 960756..961190 (+) 435 WP_232085815.1 hypothetical protein -
  H1W90_RS04985 (STHERMO_1113) glgP 961296..963560 (-) 2265 WP_179971809.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41518.68 Da        Isoelectric Point: 9.7411

>NTDB_id=1010930 H1W90_RS04965 WP_179966615.1 957666..958736(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_1048]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVINVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1010930 H1W90_RS04965 WP_179966615.1 957666..958736(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCATATTCTTTTACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTAACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823

Multiple sequence alignment