Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | ABPD34_RS08020 | Genome accession | NZ_CP158359 |
| Coordinates | 1721681..1723495 (+) | Length | 604 a.a. |
| NCBI ID | WP_010372513.1 | Uniprot ID | - |
| Organism | Weissella cibaria strain CXO-1 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1716681..1728495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABPD34_RS07995 | - | 1716931..1717248 (+) | 318 | WP_010372498.1 | PTS sugar transporter subunit IIB | - |
| ABPD34_RS08000 | - | 1717294..1717617 (+) | 324 | WP_010372502.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| ABPD34_RS08005 | - | 1717623..1719074 (+) | 1452 | WP_010372504.1 | 6-phospho-beta-glucosidase | - |
| ABPD34_RS08010 | - | 1719141..1720505 (+) | 1365 | WP_010372507.1 | PTS sugar transporter subunit IIC | - |
| ABPD34_RS08015 | - | 1720643..1721641 (+) | 999 | WP_197458866.1 | competence protein CoiA family protein | - |
| ABPD34_RS08020 | pepF | 1721681..1723495 (+) | 1815 | WP_010372513.1 | oligoendopeptidase F | Regulator |
| ABPD34_RS08025 | - | 1723585..1724304 (-) | 720 | WP_010372516.1 | MIP/aquaporin family protein | - |
| ABPD34_RS08030 | - | 1724612..1725001 (+) | 390 | WP_010372520.1 | DUF948 domain-containing protein | - |
| ABPD34_RS08035 | - | 1725017..1725589 (+) | 573 | WP_010372524.1 | hypothetical protein | - |
| ABPD34_RS08040 | ccpA | 1725648..1726649 (-) | 1002 | WP_010373031.1 | catabolite control protein A | - |
| ABPD34_RS08045 | - | 1726901..1728001 (+) | 1101 | WP_010373028.1 | Xaa-Pro peptidase family protein | - |
Sequence
Protein
Download Length: 604 a.a. Molecular weight: 67749.61 Da Isoelectric Point: 4.2890
>NTDB_id=1010911 ABPD34_RS08020 WP_010372513.1 1721681..1723495(+) (pepF) [Weissella cibaria strain CXO-1]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFVQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEQRLNEFEALVAELAAE
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFVQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEQRLNEFEALVAELAAE
Nucleotide
Download Length: 1815 bp
>NTDB_id=1010911 ABPD34_RS08020 WP_010372513.1 1721681..1723495(+) (pepF) [Weissella cibaria strain CXO-1]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACAATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGTCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
AGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAGCCTAAGC
TGGGGGCGTATAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGGGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTGAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGATAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCCGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCCGGGCTTGATATGACTAAGCCAGATTACTTGCGTGATACATTCAAAGTGTT
CGAACAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACAATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGTCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
AGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAGCCTAAGC
TGGGGGCGTATAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGGGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTGAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGATAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCCGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCCGGGCTTGATATGACTAAGCCAGATTACTTGCGTGATACATTCAAAGTGTT
CGAACAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
53.299 |
97.848 |
0.522 |