Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ABOE65_RS01835 Genome accession   NZ_CP158358
Coordinates   352089..352253 (+) Length   54 a.a.
NCBI ID   WP_012116773.1    Uniprot ID   -
Organism   Bacillus velezensis strain HY23     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 347089..357253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOE65_RS01830 (ABOE65_01825) srfAB 348980..352072 (+) 3093 Protein_320 surfactin non-ribosomal peptide synthetase SrfAB -
  ABOE65_RS01835 (ABOE65_01830) comS 352089..352253 (+) 165 WP_012116773.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6153.16 Da        Isoelectric Point: 12.0559

>NTDB_id=1010830 ABOE65_RS01835 WP_012116773.1 352089..352253(+) (comS) [Bacillus velezensis strain HY23]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1010830 ABOE65_RS01835 WP_012116773.1 352089..352253(+) (comS) [Bacillus velezensis strain HY23]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment