Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ABRA92_RS21355 Genome accession   NZ_CP158306
Coordinates   1100295..1101476 (+) Length   393 a.a.
NCBI ID   WP_350225956.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095295..1106476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS21325 - 1096340..1096822 (-) 483 WP_025612062.1 hypothetical protein -
  ABRA92_RS21330 - 1096852..1097385 (-) 534 WP_350225955.1 hypothetical protein -
  ABRA92_RS21335 - 1097400..1097732 (-) 333 WP_276435090.1 hypothetical protein -
  ABRA92_RS21340 - 1098089..1098244 (-) 156 Protein_970 AlpA family transcriptional regulator -
  ABRA92_RS21345 - 1098342..1098706 (+) 365 Protein_971 JAB domain-containing protein -
  ABRA92_RS21350 ylqF 1098996..1099940 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  ABRA92_RS21355 cqsA 1100295..1101476 (+) 1182 WP_350225956.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ABRA92_RS21360 cqsS 1101554..1103602 (-) 2049 WP_029799641.1 hybrid sensor histidine kinase/response regulator Regulator
  ABRA92_RS21365 - 1103922..1104209 (+) 288 Protein_975 HAD family phosphatase -
  ABRA92_RS21370 - 1104487..1105526 (+) 1040 Protein_976 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4987

>NTDB_id=1010563 ABRA92_RS21355 WP_350225956.1 1100295..1101476(+) (cqsA) [Vibrio parahaemolyticus strain VP93]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKEADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1010563 ABRA92_RS21355 WP_350225956.1 1100295..1101476(+) (cqsA) [Vibrio parahaemolyticus strain VP93]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACGC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGAGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAATGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGAATTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment