Detailed information NTG1010544

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ABRA92_RS06415
• Genome accession: NZ_CP158305
• Coordinates: 1357153..1358574 (-)
• Length: 473 a.a.
• NCBI ID: WP_021449193.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP93
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1352153..1363574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRA92_RS06390	-	1352717..1353367 (+)	651	WP_020840479.1	thiopurine S-methyltransferase	-
ABRA92_RS06395	purT	1353469..1354644 (-)	1176	WP_350225815.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ABRA92_RS06400	cdd	1354792..1355679 (-)	888	WP_015296604.1	cytidine deaminase	-
ABRA92_RS06405	-	1356044..1356721 (-)	678	WP_005454891.1	LrgB family protein	-
ABRA92_RS06410	-	1356723..1357097 (-)	375	WP_350225816.1	CidA/LrgA family protein	-
ABRA92_RS06415	sbcB	1357153..1358574 (-)	1422	WP_021449193.1	exodeoxyribonuclease I	Machinery gene
ABRA92_RS06420	-	1358730..1360103 (-)	1374	WP_025628914.1	L-cystine transporter	-
ABRA92_RS06425	-	1360296..1360991 (-)	696	WP_017448627.1	NAD(P)H-binding protein	-
ABRA92_RS06430	cobT	1361675..1362718 (+)	1044	WP_021453099.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
ABRA92_RS06435	-	1362763..1363515 (+)	753	WP_350225893.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54645.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=1010544 ABRA92_RS06415 WP_021449193.1 1357153..1358574(-) (sbcB) [Vibrio parahaemolyticus strain VP93]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=1010544 ABRA92_RS06415 WP_021449193.1 1357153..1358574(-) (sbcB) [Vibrio parahaemolyticus strain VP93]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGCGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGTTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799