Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABRA92_RS02825 Genome accession   NZ_CP158305
Coordinates   572888..573406 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain VP93     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 567888..578406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS02815 gshA 570623..572191 (+) 1569 WP_350225700.1 glutamate--cysteine ligase -
  ABRA92_RS02820 - 572216..572821 (+) 606 WP_015297256.1 hypothetical protein -
  ABRA92_RS02825 luxS 572888..573406 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  ABRA92_RS02830 - 573468..574748 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  ABRA92_RS02835 - 574874..575668 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  ABRA92_RS02840 ffh 575881..577263 (+) 1383 WP_005462555.1 signal recognition particle protein -
  ABRA92_RS02845 rpsP 577473..577721 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  ABRA92_RS02850 rimM 577750..578298 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=1010534 ABRA92_RS02825 WP_005462534.1 572888..573406(+) (luxS) [Vibrio parahaemolyticus strain VP93]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1010534 ABRA92_RS02825 WP_005462534.1 572888..573406(+) (luxS) [Vibrio parahaemolyticus strain VP93]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCTAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment