Detailed information NTG1010495

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H1W89_RS02910
• Genome accession: NZ_LR822029
• Coordinates: 544482..545408 (+)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus isolate STH_CIRM_1035
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 539482..550408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W89_RS02900 (STHERMO_0608)	amiA	540960..542927 (+)	1968	WP_014621802.1	peptide ABC transporter substrate-binding protein	Regulator
H1W89_RS02905 (STHERMO_0609)	amiC	542989..544482 (+)	1494	WP_014608541.1	ABC transporter permease	Regulator
H1W89_RS02910 (STHERMO_0610)	amiD	544482..545408 (+)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H1W89_RS02915 (STHERMO_0611)	amiE	545418..546503 (+)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H1W89_RS02920 (STHERMO_0612)	-	546496..547425 (+)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
H1W89_RS02925 (STHERMO_0613)	-	547475..548259 (-)	785	Protein_525	ABC transporter permease	-
H1W89_RS02930 (STHERMO_0615)	-	548271..548969 (-)	699	WP_014608540.1	ABC transporter ATP-binding protein	-
H1W89_RS02935 (STHERMO_0616)	-	548974..549351 (-)	378	WP_011681413.1	GntR family transcriptional regulator	-
H1W89_RS02940 (STHERMO_0618)	-	549535..550329 (+)	795	WP_180474516.1	HAD-IIB family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1010495 H1W89_RS02910 WP_002946409.1 544482..545408(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1035]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1010495 H1W89_RS02910 WP_002946409.1 544482..545408(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964