Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABOD76_RS14520 Genome accession   NZ_CP158299
Coordinates   1883704..1884321 (+) Length   205 a.a.
NCBI ID   WP_350242680.1    Uniprot ID   A0AAU7U859
Organism   Deinococcus sonorensis KR-87     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878704..1889321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS14495 (ABOD76_14445) - 1879263..1879922 (-) 660 WP_350242675.1 hypothetical protein -
  ABOD76_RS14500 (ABOD76_14450) - 1880182..1881351 (+) 1170 WP_350242676.1 class I SAM-dependent rRNA methyltransferase -
  ABOD76_RS14505 (ABOD76_14455) - 1881399..1881710 (+) 312 WP_350242677.1 hypothetical protein -
  ABOD76_RS14510 (ABOD76_14460) - 1881726..1883141 (-) 1416 WP_350242678.1 PLP-dependent aminotransferase family protein -
  ABOD76_RS14515 (ABOD76_14465) - 1883180..1883707 (+) 528 WP_350242679.1 hypothetical protein -
  ABOD76_RS14520 (ABOD76_14470) comF 1883704..1884321 (+) 618 WP_350242680.1 double zinc ribbon domain-containing protein Machinery gene
  ABOD76_RS14525 (ABOD76_14475) - 1884369..1884800 (+) 432 WP_350242681.1 hypothetical protein -
  ABOD76_RS14530 (ABOD76_14480) - 1884802..1885125 (+) 324 WP_350242682.1 hypothetical protein -
  ABOD76_RS14535 (ABOD76_14485) - 1885168..1886976 (+) 1809 WP_350242683.1 N-acetylmuramoyl-L-alanine amidase -
  ABOD76_RS14540 (ABOD76_14490) - 1887028..1887900 (+) 873 WP_350242684.1 hypothetical protein -
  ABOD76_RS14545 (ABOD76_14495) - 1887907..1888494 (-) 588 WP_350242685.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21823.48 Da        Isoelectric Point: 11.3725

>NTDB_id=1010489 ABOD76_RS14520 WP_350242680.1 1883704..1884321(+) (comF) [Deinococcus sonorensis KR-87]
MTGWLRALLPRRCPGCQRQLGSADGLCPACRGQLRAQVYRRSLLRPDDVPHLVALGPYRGVLGRTVRALKYGGARELAPL
LGAALAEGVPAAWQVRAVLHVPMHPARLRQRGYDQAALLAAEVARQLGVPHVTALARVRQGGPQAKQAAEQRRTALQGAF
VCRSVPAGALLLLDDVMTTGSTLTACRDALTQAGAGPVYYAVVAR

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1010489 ABOD76_RS14520 WP_350242680.1 1883704..1884321(+) (comF) [Deinococcus sonorensis KR-87]
ATGACCGGCTGGCTGCGCGCCCTGCTGCCGCGCCGCTGCCCCGGCTGTCAGCGGCAGCTGGGGTCGGCCGACGGGTTGTG
TCCGGCCTGCCGGGGGCAGCTGCGGGCGCAGGTCTACCGCCGCAGCCTGCTGCGCCCCGACGACGTGCCGCACCTGGTGG
CGTTGGGGCCGTACCGGGGGGTGCTGGGCCGGACGGTGCGGGCCCTGAAGTACGGCGGCGCGCGCGAGCTGGCGCCGCTG
CTGGGCGCCGCGCTGGCGGAAGGGGTCCCGGCGGCGTGGCAGGTCCGGGCGGTGCTGCACGTGCCGATGCATCCGGCCCG
GCTGCGCCAGCGCGGGTACGACCAGGCCGCTCTGCTGGCCGCCGAGGTGGCGCGGCAGCTGGGGGTGCCGCATGTGACGG
CGCTGGCGCGGGTGCGGCAGGGTGGCCCGCAGGCGAAGCAGGCCGCCGAGCAGCGCCGGACAGCCCTGCAGGGCGCCTTC
GTCTGCCGATCCGTACCGGCCGGCGCACTCCTGTTGCTGGACGATGTGATGACCACCGGATCTACCCTGACCGCCTGTCG
GGACGCGCTGACGCAGGCCGGCGCCGGGCCGGTGTATTACGCCGTGGTGGCCCGCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(5-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.252

100

0.585

Multiple sequence alignment