Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABOD76_RS11020 Genome accession   NZ_CP158299
Coordinates   1160140..1160511 (-) Length   123 a.a.
NCBI ID   WP_350244887.1    Uniprot ID   -
Organism   Deinococcus sonorensis KR-87     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155140..1165511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS11005 (ABOD76_10965) - 1155632..1157230 (+) 1599 WP_350244884.1 alpha-amylase family glycosyl hydrolase -
  ABOD76_RS11010 (ABOD76_10970) - 1157418..1157909 (-) 492 WP_350244885.1 hypothetical protein -
  ABOD76_RS11015 (ABOD76_10975) comEC 1157927..1160140 (-) 2214 WP_350244886.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABOD76_RS11020 (ABOD76_10980) comEA 1160140..1160511 (-) 372 WP_350244887.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABOD76_RS11025 (ABOD76_10985) rpsL 1160768..1161175 (+) 408 WP_350245246.1 30S ribosomal protein S12 -
  ABOD76_RS11030 (ABOD76_10990) rpsG 1161329..1161799 (+) 471 WP_350244888.1 30S ribosomal protein S7 -
  ABOD76_RS11035 (ABOD76_10995) fusA 1161918..1164005 (+) 2088 WP_350244889.1 elongation factor G -
  ABOD76_RS11040 (ABOD76_11000) - 1164059..1164676 (-) 618 WP_350244890.1 hypothetical protein -
  ABOD76_RS11045 (ABOD76_11005) - 1164673..1165398 (-) 726 WP_350244891.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13120.22 Da        Isoelectric Point: 7.1650

>NTDB_id=1010481 ABOD76_RS11020 WP_350244887.1 1160140..1160511(-) (comEA) [Deinococcus sonorensis KR-87]
MLQSTDARWTTALIVAALLCGGWALWPVVAPASAPQVSHQPLPLPPAEAAPEYRTTGSITPLISGRLDLNTATEEQLEAL
PKIGPALAQRLRAGRPYHSLADLDRVKGVGPALLQTLEPLVRF

Nucleotide


Download         Length: 372 bp        

>NTDB_id=1010481 ABOD76_RS11020 WP_350244887.1 1160140..1160511(-) (comEA) [Deinococcus sonorensis KR-87]
ATGCTGCAGAGCACCGACGCCCGCTGGACCACTGCCCTGATCGTGGCTGCGCTGCTGTGCGGCGGCTGGGCGCTGTGGCC
GGTGGTGGCCCCGGCCAGCGCGCCACAGGTGAGCCATCAGCCGTTGCCGCTGCCGCCAGCCGAGGCCGCTCCCGAGTACC
GCACCACCGGCAGCATCACGCCGCTGATCTCAGGACGCCTCGACTTGAACACCGCCACCGAGGAACAGTTGGAGGCGTTG
CCAAAAATCGGTCCAGCCTTGGCGCAGCGGTTGCGGGCAGGCCGGCCGTATCACTCGCTGGCCGATCTGGACCGGGTGAA
AGGGGTGGGACCGGCCCTGCTACAGACCCTGGAGCCGCTGGTGCGCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(66-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

96.748

0.569

Multiple sequence alignment