Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABOD76_RS11015 Genome accession   NZ_CP158299
Coordinates   1157927..1160140 (-) Length   737 a.a.
NCBI ID   WP_350244886.1    Uniprot ID   -
Organism   Deinococcus sonorensis KR-87     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152927..1165140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS10995 (ABOD76_10955) - 1152966..1154375 (+) 1410 WP_350244882.1 S8 family serine peptidase -
  ABOD76_RS11000 (ABOD76_10960) - 1154430..1155575 (+) 1146 WP_350244883.1 LCP family protein -
  ABOD76_RS11005 (ABOD76_10965) - 1155632..1157230 (+) 1599 WP_350244884.1 alpha-amylase family glycosyl hydrolase -
  ABOD76_RS11010 (ABOD76_10970) - 1157418..1157909 (-) 492 WP_350244885.1 hypothetical protein -
  ABOD76_RS11015 (ABOD76_10975) comEC 1157927..1160140 (-) 2214 WP_350244886.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABOD76_RS11020 (ABOD76_10980) comEA 1160140..1160511 (-) 372 WP_350244887.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABOD76_RS11025 (ABOD76_10985) rpsL 1160768..1161175 (+) 408 WP_350245246.1 30S ribosomal protein S12 -
  ABOD76_RS11030 (ABOD76_10990) rpsG 1161329..1161799 (+) 471 WP_350244888.1 30S ribosomal protein S7 -
  ABOD76_RS11035 (ABOD76_10995) fusA 1161918..1164005 (+) 2088 WP_350244889.1 elongation factor G -
  ABOD76_RS11040 (ABOD76_11000) - 1164059..1164676 (-) 618 WP_350244890.1 hypothetical protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 78251.57 Da        Isoelectric Point: 10.4213

>NTDB_id=1010480 ABOD76_RS11015 WP_350244886.1 1157927..1160140(-) (comEC) [Deinococcus sonorensis KR-87]
MTRGQALFPAPLAITPAHWWERLPPTLPPLLGLMAGILLGFGSGWGWPAALLALALCVPGRRWPLALLAVLACGLGCVRE
QAWWNAPDPLAGYIGAQLTLQGDWDGQLLHLRDPASAVALSPRPTLGPGPLRVSGVLVRPPPRRIPGGFDARFWLRAQGV
RAELVAARVRSHQPQRGLKGWFRRGLTAGLPAREAALMQAIELGDKAELGQQTFDDGQAVQASFARAGLSHLMALSGQNV
ALLIGGLTLLLTRLPGQTLGRWRYPAMLLFLLGFLWLVGPSPSITRAVLMGMASLGALWAGRGRLDLYGVLALTALVGLT
WQPGWLFDLGFQLSYLAVLGLSLSGRAAALLPPRWPEPLRLALVGTVLAEVATLPLVAGSFGQLPLVGLPANLLAELIMA
ALVPLGFVAGLLGPWSGPLQTINHLLLDALLGVAQTFGHAPVLPWGQVSAAGVAAYAVFALAGALTLTGRLPLRSLALVT
LLCVLGTALPGRLQLPREVVYLDVGQGDSTLLRLNGLEVLVDGGGTPRGDYDVGARTVVPALRALGVTRLNVVVATHADA
DHIEGLISVLQLMRVGELWVGQPKRSDPLMGALIATAQTRHIPVREVRRGDHLQAGDLSLTVLWPQGAPWAAADNDNSVA
LRLDGPQFHTALLGDLPDPAEERLGVGRLDLLKLAHHGSRFSSSAAFLAETQPRAAIISVGRNSYGHPNAAVLERLRQQG
VQVWRTDELGTIRWPIP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1010480 ABOD76_RS11015 WP_350244886.1 1157927..1160140(-) (comEC) [Deinococcus sonorensis KR-87]
ATGACCCGGGGACAGGCGCTCTTTCCTGCCCCCCTCGCCATCACTCCGGCCCACTGGTGGGAACGGCTGCCCCCGACCCT
GCCGCCGCTGCTGGGGCTGATGGCGGGCATTCTGCTGGGCTTCGGGTCCGGCTGGGGCTGGCCGGCGGCCCTCCTGGCCC
TGGCGCTGTGCGTCCCGGGGCGACGCTGGCCACTGGCCCTGCTGGCCGTGCTGGCTTGTGGACTGGGCTGTGTGCGGGAG
CAGGCGTGGTGGAACGCTCCGGACCCGCTGGCCGGCTACATCGGCGCTCAGCTGACGCTCCAGGGCGACTGGGACGGTCA
GCTGCTGCACCTCCGGGACCCGGCCTCAGCCGTGGCCCTCTCGCCCCGCCCGACGCTGGGACCGGGGCCGCTGAGGGTGT
CGGGCGTGCTGGTGCGGCCTCCGCCCCGCCGTATTCCCGGCGGCTTCGACGCCCGCTTCTGGCTGCGGGCGCAGGGTGTG
CGGGCAGAGCTTGTGGCCGCGCGGGTCCGGAGCCACCAGCCGCAGCGTGGCCTGAAAGGCTGGTTCCGGCGTGGCCTGAC
GGCCGGGCTGCCGGCCCGAGAGGCGGCGCTGATGCAGGCGATCGAGCTGGGCGATAAGGCGGAGCTGGGGCAGCAGACCT
TCGATGATGGGCAGGCGGTGCAGGCCAGCTTCGCCCGTGCCGGCCTGTCGCACCTGATGGCGCTCAGCGGCCAGAACGTG
GCGCTGCTGATCGGGGGGCTGACCCTGCTGCTGACGCGGCTGCCGGGCCAGACGCTGGGCCGCTGGCGCTACCCGGCGAT
GCTGCTGTTCCTGCTGGGCTTTCTGTGGCTGGTGGGACCGTCTCCCAGCATCACGCGGGCGGTGCTGATGGGCATGGCCA
GCCTGGGCGCGCTGTGGGCCGGGCGGGGCCGGCTGGACCTGTACGGCGTGCTGGCGCTGACCGCACTGGTGGGCCTGACG
TGGCAGCCCGGCTGGCTGTTCGACCTGGGTTTCCAGCTGAGCTACCTGGCGGTGCTGGGCCTGTCGCTGTCCGGGCGGGC
GGCGGCGCTGCTGCCCCCGCGCTGGCCGGAACCGCTGCGGCTGGCACTGGTGGGCACCGTGCTGGCCGAAGTCGCCACCC
TGCCGCTGGTGGCGGGCAGCTTCGGTCAGCTGCCCCTGGTGGGGCTGCCCGCCAACCTGCTGGCCGAGCTGATCATGGCG
GCGCTGGTGCCGCTGGGCTTTGTGGCCGGGCTGCTCGGTCCCTGGAGCGGGCCGCTCCAGACGATCAATCACCTGCTGCT
GGACGCCCTGCTGGGGGTGGCGCAGACATTCGGGCACGCGCCGGTGCTGCCGTGGGGACAGGTGTCGGCGGCGGGGGTGG
CCGCCTACGCCGTGTTCGCGCTGGCCGGAGCGCTGACCCTGACCGGGCGGCTGCCGCTGCGCTCGCTGGCGCTGGTGACG
CTGCTGTGCGTGCTGGGCACCGCGCTGCCGGGCCGGCTGCAGCTGCCCCGTGAAGTGGTGTATCTGGACGTGGGGCAGGG
CGACAGCACCCTGCTGCGCCTGAATGGCCTGGAAGTGCTGGTGGATGGCGGGGGCACGCCACGCGGCGACTACGACGTGG
GGGCCAGGACCGTGGTGCCGGCGCTGCGGGCGCTGGGGGTGACGCGCCTGAACGTGGTGGTGGCCACCCATGCCGACGCC
GACCACATCGAGGGCCTGATCAGCGTGCTGCAGCTGATGCGGGTGGGTGAGTTGTGGGTGGGGCAGCCCAAGCGATCGGA
CCCGCTGATGGGCGCGCTGATCGCCACCGCCCAGACCCGGCATATTCCGGTGCGTGAGGTCAGGCGCGGCGACCACCTGC
AGGCCGGTGACCTGAGCCTCACGGTGCTGTGGCCGCAGGGGGCACCCTGGGCCGCCGCCGACAATGACAACAGCGTGGCG
CTCCGGCTCGACGGCCCACAGTTTCACACCGCCCTGCTGGGCGACCTGCCGGACCCGGCCGAAGAACGGCTCGGCGTGGG
ACGGCTGGACCTGCTGAAACTCGCCCACCACGGCAGCCGCTTCTCCAGTTCGGCGGCGTTTCTGGCCGAGACGCAGCCGC
GGGCCGCCATCATCAGCGTGGGGCGCAACAGCTACGGCCACCCGAACGCGGCGGTGCTGGAGCGGCTCCGGCAGCAGGGC
GTCCAGGTCTGGCGTACCGATGAACTGGGCACCATCCGCTGGCCGATTCCGTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(541-660)

Competence protein (Competence)

(218-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.967

89.417

0.518

Multiple sequence alignment