Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H1W89_RS00215 Genome accession   NZ_LR822029
Coordinates   30447..31220 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus isolate STH_CIRM_1035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25447..36220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W89_RS00195 (STHERMO_0023) - 25518..26999 (+) 1482 WP_014607819.1 CHAP domain-containing protein -
  H1W89_RS00200 (STHERMO_0024) - 27213..28178 (+) 966 WP_180474462.1 ribose-phosphate diphosphokinase -
  H1W89_RS00205 - 28227..29072 (-) 846 Protein_19 transposase -
  H1W89_RS00210 (STHERMO_0027) - 29285..30460 (+) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  H1W89_RS00215 (STHERMO_0028) recO 30447..31220 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  H1W89_RS00220 (STHERMO_0029) plsX 31437..32441 (+) 1005 WP_180474463.1 phosphate acyltransferase PlsX -
  H1W89_RS00225 (STHERMO_0030) - 32441..32686 (+) 246 WP_014727282.1 phosphopantetheine-binding protein -
  H1W89_RS00230 (STHERMO_0031) purC 32971..33678 (+) 708 WP_014727283.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=1010464 H1W89_RS00215 WP_002946256.1 30447..31220(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_1035]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1010464 H1W89_RS00215 WP_002946256.1 30447..31220(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607