Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE97_RS02810 Genome accession   NZ_AP027432
Coordinates   82791..83420 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC581 isolate EC581     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 77791..88420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE97_RS02790 (MUTS9_05410) ycbZ 78180..79940 (-) 1761 WP_286338324.1 Lon protease family protein -
  QUE97_RS02795 (MUTS9_05420) matP 80126..80578 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUE97_RS02800 (MUTS9_05430) ompA 80654..81706 (-) 1053 WP_000750418.1 porin OmpA -
  QUE97_RS02805 (MUTS9_05450) sulA 82063..82572 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QUE97_RS02810 (MUTS9_05460) sxy/tfoX 82791..83420 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE97_RS02815 (MUTS9_05470) yccS 83383..85545 (-) 2163 WP_000875041.1 YccS family putative transporter -
  QUE97_RS02820 (MUTS9_05480) yccF 85555..86001 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QUE97_RS02825 (MUTS9_05490) helD 86124..88178 (+) 2055 WP_063085342.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101046 QUE97_RS02810 WP_000839153.1 82791..83420(+) (sxy/tfoX) [Escherichia coli strain EC581 isolate EC581]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101046 QUE97_RS02810 WP_000839153.1 82791..83420(+) (sxy/tfoX) [Escherichia coli strain EC581 isolate EC581]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment