Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H1X63_RS08430 Genome accession   NZ_LR822027
Coordinates   1629985..1630716 (-) Length   243 a.a.
NCBI ID   WP_179972258.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624985..1635716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS08405 (STHERMO_1844) - 1625011..1625367 (-) 357 WP_180487753.1 DUF805 domain-containing protein -
  H1X63_RS08410 (STHERMO_1845) - 1625588..1625881 (-) 294 WP_232086247.1 hypothetical protein -
  H1X63_RS08415 (STHERMO_1846) - 1626215..1627465 (-) 1251 WP_071417383.1 glutamate-5-semialdehyde dehydrogenase -
  H1X63_RS08420 (STHERMO_1847) proB 1627467..1628270 (-) 804 WP_179972256.1 glutamate 5-kinase -
  H1X63_RS08425 (STHERMO_1848) - 1628393..1629982 (-) 1590 WP_179972257.1 ABC transporter permease -
  H1X63_RS08430 (STHERMO_1849) pptA 1629985..1630716 (-) 732 WP_179972258.1 ABC transporter ATP-binding protein Regulator
  H1X63_RS08435 (STHERMO_1851) - 1630991..1631722 (+) 732 WP_179972259.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27637.62 Da        Isoelectric Point: 5.0263

>NTDB_id=1010436 H1X63_RS08430 WP_179972258.1 1629985..1630716(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_998]
MIRFEHVTKRYENKDALSDLNLEIRDGEIFGLIGHNGAGKTTTISILTSIIEASYGEVYVDDMALSLHRDAIKKKIAYVP
DSPDLFLNLTANDYWYFLTRIYDLEANQVEERLINLMSTFDLTENRYNLISSFSHGMRQKVVVIGALLVNPQIWILDEPL
TGLDPQASYDLKEAMRNHAKEGNSVLFSTHVLSVAEQLCDRIGILKKGKLIFQGPLAELKHQYPDKDLETIYLEMAGRKA
EEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1010436 H1X63_RS08430 WP_179972258.1 1629985..1630716(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGATTCGATTTGAACATGTAACGAAACGTTATGAAAATAAGGATGCTCTCTCAGATCTTAATCTCGAGATTCGAGACGG
TGAAATCTTTGGTTTGATTGGTCACAATGGAGCTGGTAAAACCACGACTATTTCCATTTTGACGTCTATTATTGAAGCCA
GTTACGGAGAAGTTTACGTGGATGATATGGCCCTCAGCCTGCATCGTGATGCTATTAAGAAGAAAATAGCATATGTGCCA
GATTCGCCGGACTTATTTCTAAATTTGACTGCCAATGACTACTGGTACTTTTTGACACGTATCTATGATTTGGAAGCTAA
TCAGGTTGAGGAACGTTTGATTAATCTCATGTCTACCTTTGACTTGACTGAAAATCGCTATAACCTCATTTCATCCTTCT
CTCACGGTATGCGTCAGAAGGTTGTTGTTATCGGTGCTCTTCTGGTTAATCCACAGATTTGGATTTTAGATGAGCCTTTG
ACTGGTCTGGACCCACAGGCATCTTATGATTTGAAAGAAGCTATGCGTAACCATGCTAAGGAGGGCAATAGTGTGCTCTT
CTCAACCCACGTTTTAAGTGTAGCTGAACAGCTCTGTGATCGCATCGGTATTTTGAAGAAAGGAAAACTCATCTTCCAAG
GGCCTCTAGCTGAACTTAAGCATCAGTACCCTGACAAGGATTTGGAAACCATTTATCTAGAAATGGCTGGACGTAAGGCC
GAGGAGGTGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

36.975

97.942

0.362
  pptA Streptococcus salivarius strain HSISS4

36.975

97.942

0.362