Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ABQ280_RS10250 Genome accession   NZ_CP158284
Coordinates   2058639..2059355 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain ATCC 6538     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053639..2064355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS10220 (ABQ280_10220) - 2053859..2054485 (+) 627 WP_000522384.1 nitroreductase family protein -
  ABQ280_RS10225 (ABQ280_10225) - 2054846..2055631 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  ABQ280_RS10230 (ABQ280_10230) - 2056227..2056361 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  ABQ280_RS10235 (ABQ280_10235) agrB 2056597..2057166 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  ABQ280_RS10240 (ABQ280_10240) agrD 2057163..2057303 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  ABQ280_RS10245 (ABQ280_10245) agrC 2057328..2058620 (+) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  ABQ280_RS10250 (ABQ280_10250) agrA 2058639..2059355 (+) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  ABQ280_RS10255 (ABQ280_10255) - 2059427..2059536 (+) 110 Protein_1982 hypothetical protein -
  ABQ280_RS10260 (ABQ280_10260) - 2059724..2060683 (-) 960 WP_001253302.1 carbohydrate kinase -
  ABQ280_RS10265 (ABQ280_10265) - 2060680..2062164 (-) 1485 WP_042727666.1 sucrose-6-phosphate hydrolase -
  ABQ280_RS10270 (ABQ280_10270) - 2062313..2063263 (-) 951 WP_000790324.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=1010426 ABQ280_RS10250 WP_000688498.1 2058639..2059355(+) (agrA) [Staphylococcus aureus strain ATCC 6538]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1010426 ABQ280_RS10250 WP_000688498.1 2058639..2059355(+) (agrA) [Staphylococcus aureus strain ATCC 6538]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment