Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABE953_RS02635 Genome accession   NZ_CP158282
Coordinates   564836..566503 (+) Length   555 a.a.
NCBI ID   WP_301265581.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain LZZAY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 559836..571503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE953_RS02605 (ABE953_02600) folD 560218..561075 (+) 858 WP_003705927.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ABE953_RS02610 (ABE953_02605) xseA 561068..562408 (+) 1341 WP_003705928.1 exodeoxyribonuclease VII large subunit -
  ABE953_RS02615 (ABE953_02610) - 562408..562635 (+) 228 WP_003705929.1 exodeoxyribonuclease VII small subunit -
  ABE953_RS02620 (ABE953_02615) - 562601..563518 (+) 918 WP_003709870.1 polyprenyl synthetase family protein -
  ABE953_RS02625 (ABE953_02620) - 563521..564348 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  ABE953_RS02630 (ABE953_02625) - 564373..564831 (+) 459 WP_003699854.1 arginine repressor -
  ABE953_RS02635 (ABE953_02630) recN 564836..566503 (+) 1668 WP_301265581.1 DNA repair protein RecN Machinery gene
  ABE953_RS02640 (ABE953_02635) lexA 566567..567187 (-) 621 WP_003705933.1 transcriptional repressor LexA -
  ABE953_RS02645 (ABE953_02640) - 567298..567588 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  ABE953_RS02650 (ABE953_02645) - 567715..567939 (+) 225 WP_003705934.1 YneF family protein -
  ABE953_RS02655 (ABE953_02650) yihA 568022..568612 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABE953_RS02660 (ABE953_02655) - 568630..568929 (+) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  ABE953_RS02665 (ABE953_02660) - 569034..570848 (+) 1815 WP_410504790.1 DUF2207 family protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63165.89 Da        Isoelectric Point: 4.8139

>NTDB_id=1010374 ABE953_RS02635 WP_301265581.1 564836..566503(+) (recN) [Ligilactobacillus salivarius strain LZZAY01]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIGEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=1010374 ABE953_RS02635 WP_301265581.1 564836..566503(+) (recN) [Ligilactobacillus salivarius strain LZZAY01]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAATTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTAG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATAGTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCCGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGACCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGCGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACGTTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.902

100

0.494

Multiple sequence alignment