Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABOA58_RS25520 Genome accession   NZ_CP158190
Coordinates   5150236..5151186 (-) Length   316 a.a.
NCBI ID   WP_350300506.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5145236..5156186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS25505 (ABOA58_25445) - 5147389..5148336 (-) 948 WP_350302972.1 siderophore ABC transporter substrate-binding protein -
  ABOA58_RS25510 (ABOA58_25450) - 5148544..5149302 (-) 759 WP_034310071.1 ABC transporter ATP-binding protein -
  ABOA58_RS25515 (ABOA58_25455) - 5149296..5150243 (-) 948 WP_133351182.1 iron chelate uptake ABC transporter family permease subunit -
  ABOA58_RS25520 (ABOA58_25460) ceuB 5150236..5151186 (-) 951 WP_350300506.1 ABC transporter permease Machinery gene
  ABOA58_RS25525 (ABOA58_25465) - 5151437..5151799 (+) 363 WP_350300507.1 DUF1450 domain-containing protein -
  ABOA58_RS25530 (ABOA58_25470) - 5152015..5153664 (+) 1650 WP_350300508.1 M14 family metallocarboxypeptidase -
  ABOA58_RS25535 (ABOA58_25475) shc 5153830..5155725 (+) 1896 WP_350300509.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34909.20 Da        Isoelectric Point: 9.6490

>NTDB_id=1010246 ABOA58_RS25520 WP_350300506.1 5150236..5151186(-) (ceuB) [Peribacillus frigoritolerans strain LSJ146]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRLVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYVSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1010246 ABOA58_RS25520 WP_350300506.1 5150236..5151186(-) (ceuB) [Peribacillus frigoritolerans strain LSJ146]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGACATTACCCC
CTTGGATTTATTGAATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGATTGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAACAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTTGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATTT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCCATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATGTAAGTATCCC
TCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGTTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGGTTGATCGTACCAAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTATTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTAGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

100

0.506

Multiple sequence alignment