Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABOA58_RS06915 Genome accession   NZ_CP158190
Coordinates   1401931..1403748 (+) Length   605 a.a.
NCBI ID   WP_350301745.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1396931..1408748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS06895 (ABOA58_06880) spxA 1397258..1397653 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  ABOA58_RS06900 (ABOA58_06885) mecA 1398148..1398816 (+) 669 WP_034314498.1 adaptor protein MecA -
  ABOA58_RS06905 (ABOA58_06890) cls 1398930..1400438 (+) 1509 WP_350301743.1 cardiolipin synthase -
  ABOA58_RS06910 (ABOA58_06895) - 1400536..1401744 (+) 1209 WP_350301744.1 competence protein CoiA family protein -
  ABOA58_RS06915 (ABOA58_06900) pepF 1401931..1403748 (+) 1818 WP_350301745.1 oligoendopeptidase F Regulator
  ABOA58_RS06920 (ABOA58_06905) - 1404673..1405539 (-) 867 WP_350302811.1 ClpXP adapter SpxH family protein -
  ABOA58_RS06925 (ABOA58_06910) - 1405563..1405967 (-) 405 WP_350301746.1 globin -
  ABOA58_RS06930 (ABOA58_06915) - 1406202..1406858 (-) 657 WP_350301747.1 lytic transglycosylase domain-containing protein -
  ABOA58_RS06935 (ABOA58_06920) - 1406888..1407466 (-) 579 WP_350301748.1 CYTH domain-containing protein -
  ABOA58_RS06940 (ABOA58_06925) - 1407784..1408404 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69823.21 Da        Isoelectric Point: 4.6845

>NTDB_id=1010221 ABOA58_RS06915 WP_350301745.1 1401931..1403748(+) (pepF) [Peribacillus frigoritolerans strain LSJ146]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1010221 ABOA58_RS06915 WP_350301745.1 1401931..1403748(+) (pepF) [Peribacillus frigoritolerans strain LSJ146]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCACATAAAGGCA
CGTTGGGTGAAAGCGCAGAAAAATTATTCGCGGCGCTTCAACTCCAAGATGAAGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
TGCCCAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGCAAAGTGGAAGGGTTCTTGG
AAGAAAAAGAAGAATTGAAATTATACAAGCATTCTTTAGAGGAAATCAATCTTCAGAGACCACATATCTTATCAGCAGAG
CAGGAAGAATTATTGGCGCAGGCATCAGAAGTACTCGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATAACTCACGGAAGGTATATCAGTTTCCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGGGAGTTCCGCAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCATAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAACAACATTCCGGAGACTGTATACGATAATCTCGTTAAAACGGTCAATGACAACTTGCCATTACTTCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGCAATTAGATGAACTTCATATGTATGATCTATTCACTCCACTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAGGATTATGTCCTTAAAGGACTTGCTCCGCTTGGGGAGGATTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGGTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGGGCCTATTCTTCTGGTACATACG
GGACAAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGACATTCG
GTCCATAGCTACTATACACGTAAATATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAATCTGTTGAATGATTATTTATTGAATTCAATTGAAGATGAAAAGAAACGCATTTATTTATTGAATCATT
ACCTGGAAGGTTTCCGCGGCACATTGTTCCGGCAAACGATGTTTGCAGAGTTTGAACATACCATACATTTAAAGGCTCAA
AATGGGGAAGCGTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCGCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCGACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCTGGTGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAGGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment